RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 MED25Q71SY5 747 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 MARCH3Q86UD3 253 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 DTWD2Q8NBA8 298 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 OR13C9Q8NGT0 318 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 RNASE11Q8TAA1 199 aaKnown RBP9.5□□□□□ -0.89
CCDC171-208ENST00000486641 RAB7BQ96AH8 199 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 LURAP1Q96LR2 239 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 ZNF558Q96NG5 402 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 OR2A5Q96R48 311 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 S100A13Q99584 98 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 GPR61Q9BZJ8 451 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 MMP25Q9NPA2 562 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 KCNJ16Q9NPI9 418 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 CREBZFQ9NS37 354 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 FBXO7Q9Y3I1 522 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 INSL6Q9Y581 213 aa9.5□□□□□ -0.89
CCDC171-208ENST00000486641 PUS1Q9Y606 427 aaKnown RBP eCLIP9.5□□□□□ -0.89
CCDC171-208ENST00000486641 SEC14L6B5MCN3 397 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CYR61O00622 381 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 FOXS1O43638 330 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CTSVO60911 334 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 ZNF217O75362 1048 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SOD3P08294 240 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SPARCP09486 303 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 GDI1P31150 447 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 ZNF84P51523 738 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SLC26A5P58743 744 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 EGR4Q05215 589 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 ZNF77Q15935 545 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 NNATQ16517 81 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 HNRNPA1L2Q32P51 320 aaKnown RBP9.49□□□□□ -0.89
CCDC171-208ENST00000486641 C14orf28Q4W4Y0 310 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 TCEAL5Q5H9L2 206 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 TAF8Q7Z7C8 310 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CACUL1Q86Y37 369 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 COMMD1Q8N668 190 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 TMEM104Q8NE00 496 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 LIPHQ8WWY8 451 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 HOXB13Q92826 284 aaPredicted RBP9.49□□□□□ -0.89
CCDC171-208ENST00000486641 NTNG2Q96CW9 530 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 MUCL1Q96DR8 90 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 DNAJA3Q96EY1 480 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 GALNT14Q96FL9 552 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 NEU1Q99519 415 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CNTNAP3Q9BZ76 1288 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SLC35B3Q9H1N7 401 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 UBQLN4Q9NRR5 601 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 FAM212BQ9NTI7 297 aaPredicted RBP9.49□□□□□ -0.89
CCDC171-208ENST00000486641 PISDQ9UG56 409 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SERINC4A6NH21 518 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 K7EPK0 472 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 HRKO00198 91 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SOX1O00570 391 aaPredicted RBP9.49□□□□□ -0.89
CCDC171-208ENST00000486641 KAT7O95251 611 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 IFNA10P01566 189 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 GAPDHP04406 335 aaKnown RBP9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CXCL1P09341 107 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SLC2A1P11166 492 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 TBPP20226 339 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CLDN6P56747 220 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 TDGQ13569 410 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 DHCR24Q15392 516 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 ZNF674Q2M3X9 581 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 EMC4Q5J8M3 183 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SLC18B1Q6NT16 456 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 RPUSD3Q6P087 351 aaKnown RBP9.49□□□□□ -0.89
CCDC171-208ENST00000486641 ZNF529Q6P280 563 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 MAMDC2Q7Z304 686 aaPredicted RBP9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SFTPA1Q8IWL2 248 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 KDM8Q8N371 416 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 FAM71E2Q8N5Q1 922 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 ZNF610Q8N9Z0 462 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 GATSQ8NAP1 163 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CYYR1Q96J86 154 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 JSRP1Q96MG2 331 aaPredicted RBP9.49□□□□□ -0.89
CCDC171-208ENST00000486641 TMEM68Q96MH6 324 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 SMOC1Q9H4F8 434 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CUTCQ9NTM9 273 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 PILRAQ9UKJ1 303 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 CA14Q9ULX7 337 aa9.49□□□□□ -0.89
CCDC171-208ENST00000486641 EDDM13A0A1B0GTR0 161 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 A0A1B0GWJ7 208 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 ZNF726A6NNF4 738 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 HIST1H2BKO60814 126 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 RAMP1O60894 148 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 HIST1H2BJP06899 126 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 DANCRP0C864 163 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 VSIG8P0DPA2 414 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 S1PR1P21453 382 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 GLRA1P23415 457 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 HIST1H2BOP23527 126 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 CRABP1P29762 137 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 HIST1H2BBP33778 126 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 CASP6P55212 293 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 HIST1H2BDP58876 126 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 HIST1H2BCP62807 126 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 HSD11B2P80365 405 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 QRFPP83859 136 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 CHAF1BQ13112 559 aa9.48□□□□□ -0.89
CCDC171-208ENST00000486641 ELAVL3Q14576 367 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms