RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TIMD4Q96H15 378 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 NXF2Q9GZY0 626 aaKnown RBP12.62□□□□□ -0.39
CSPG4-201ENST00000308508 A0A1W2PNV4 684 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 ANKRD61A6NGH8 418 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 GPNMBQ14956 572 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 WDR73Q6P4I2 378 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM37Q8WXS4 190 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 C11orf40Q8WZ69 217 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 RCL1Q9Y2P8 373 aaKnown RBP12.62□□□□□ -0.39
CSPG4-201ENST00000308508 GJB3O75712 270 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 SHISA4Q96DD7 197 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 TEX37Q96LM6 180 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 AAMDCQ9H7C9 122 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 A0A087X0M5 115 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 A0A1B0GX30 115 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 ARR3P36575 388 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 EXT1Q16394 746 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 STAC2Q6ZMT1 411 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 ABI3BPQ7Z7G0 1075 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM178AQ8NBL3 297 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 AGBL5Q8NDL9 886 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 DUSP21Q9H596 190 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 CSNK1G1Q9HCP0 422 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 SIGLEC6O43699 453 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 OR5AL1P0C617 328 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 TBXA2RP21731 343 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 Q6ZN92 141 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 RBM45Q8IUH3 476 aaKnown RBP12.62□□□□□ -0.39
CSPG4-201ENST00000308508 OR4C16Q8NGL9 310 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 HHIPQ96QV1 700 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 PLSCR3Q9NRY6 295 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 LOC102724200A0A096LPH7 203 aaPredicted RBP12.62□□□□□ -0.39
CSPG4-201ENST00000308508 TTRP02766 147 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 FAAP24Q9BTP7 215 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 R4GMQ9 66 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 ELOA3CA0A087WX78 387 aaPredicted RBP12.61□□□□□ -0.39
CSPG4-201ENST00000308508 CLDN34H7C241 214 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 ABCD3P28288 659 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 PFN3P60673 137 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 GLDNQ6ZMI3 551 aaPredicted RBP12.61□□□□□ -0.39
CSPG4-201ENST00000308508 ARHGEF39Q8N4T4 335 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 EDARADDQ8WWZ3 215 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 ADGRL4Q9HBW9 690 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 PDLIM7Q9NR12 457 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 TIMM10BQ9Y5J6 103 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 KLRC4-KLRK1H3BQV0 150 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 ST8SIA5O15466 376 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 AKR7A3O95154 331 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 VAMP5O95183 116 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 OR6C1Q96RD1 312 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 KIAA1324LA8MWY0 1029 aaPredicted RBP12.61□□□□□ -0.39
CSPG4-201ENST00000308508 CEBPBP17676 345 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 C9orf152Q5JTZ5 239 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 CLLU1OSQ5K130 101 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 SLC16A11Q8NCK7 471 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 OR4D10Q8NGI6 311 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 CST4P01036 141 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 DIO1P49895 249 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 RPEL1Q2QD12 228 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 DUS4LO95620 317 aaKnown RBP12.61□□□□□ -0.39
CSPG4-201ENST00000308508 MEOX1P50221 254 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 DYRK2Q92630 601 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 SCMH1Q96GD3 660 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 FER1L6-AS2Q96M78 137 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 CDCP1Q9H5V8 836 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 NUP98P52948 1817 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM189-UBE2V1I3L0A0 370 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 S100A4P26447 101 aaKnown RBP12.61□□□□□ -0.39
CSPG4-201ENST00000308508 SLC19A1P41440 591 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 IGSF11Q5DX21 431 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 XKR7Q5GH72 579 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 STUMQ69YW2 141 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 SLC25A19Q9HC21 320 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 GPR84Q9NQS5 396 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 USP3Q9Y6I4 520 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 MEIKINA0A087WXM9 373 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 DCTDP32321 178 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 OPRM1P35372 400 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM241Q24JQ0 296 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 TRMT12Q53H54 448 aaKnown RBP12.61□□□□□ -0.39
CSPG4-201ENST00000308508 OR2B11Q5JQS5 317 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 OR2A2Q6IF42 318 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 ABHD17CQ6PCB6 329 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 OR10AD1Q8NGE0 317 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 OR52B4Q8NGK2 314 aa12.61□□□□□ -0.39
CSPG4-201ENST00000308508 RTN4IP1Q8WWV3 396 aaPredicted RBP12.61□□□□□ -0.39
CSPG4-201ENST00000308508 MRPS24Q96EL2 167 aaKnown RBP12.61□□□□□ -0.39
CSPG4-201ENST00000308508 OR2J2O76002 312 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 GNG4P50150 75 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 PPOXP50336 477 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 MAGT1Q9H0U3 335 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 PRO1933Q9H354 126 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 RALYQ9UKM9 306 aaKnown RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 LSM2Q9Y333 95 aaKnown RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 COL1A1P02452 1464 aaPredicted RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 ZC3H12DA2A288 527 aaKnown RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 SERPINE3A8MV23 424 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 AP4M1O00189 453 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 HMGN4O00479 90 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 HPP00738 406 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms