RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RAB29O14966 203 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 OR7C2O60412 319 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 PALMO75781 387 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 GATBO75879 557 aaKnown RBP0.75□□□□□ -2.29
SCN1A-208ENST00000625916 SCO1O75880 301 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 SCELO95171 688 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 ARG1P05089 322 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 INAFM2P0DMQ5 153 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 CD28P10747 220 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 ATF6P18850 670 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 TNNI1P19237 187 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 NAA10P41227 235 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-208ENST00000625916 NSG1P42857 185 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 UBE2HP62256 183 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 BTN1A1Q13410 526 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 PNOCQ13519 176 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 DGCR6Q14129 220 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 ZNF266Q14584 549 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 SLC25A35Q3KQZ1 300 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 SP6Q3SY56 376 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 TMEM69Q5SWH9 247 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 DEGS2Q6QHC5 323 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 NPSR1Q6W5P4 371 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 MBOAT1Q6ZNC8 495 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 MDP1Q86V88 176 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 C11orf72Q8NBR9 251 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 OR2Z1Q8NG97 314 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 OR52E2Q8NGJ4 325 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 RAB3IL1Q8TBN0 382 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 APH1BQ8WW43 257 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 N4BP2L2Q92802 583 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-208ENST00000625916 DUS3LQ96G46 650 aaKnown RBP0.75□□□□□ -2.29
SCN1A-208ENST00000625916 SLC29A1Q99808 456 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 GON7Q9BXV9 100 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 LINC00574Q9H8X3 128 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 HRASLS2Q9NWW9 162 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 PDP1Q9P0J1 537 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-208ENST00000625916 ZNF492Q9P255 531 aa0.75□□□□□ -2.29
SCN1A-208ENST00000625916 ISY1Q9ULR0 285 aaKnown RBP0.75□□□□□ -2.29
SCN1A-208ENST00000625916 COL5A3P25940 1745 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-208ENST00000625916 SVILO95425 2214 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 ZBED9Q6R2W3 1325 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 PDZK1P1A8MUH7 402 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 SMKR1H3BMG3 65 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 SPAG6O75602 509 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 MT-ND4P03905 459 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 ANXA5P08758 320 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 HSPD1P10809 573 aaKnown RBP0.74□□□□□ -2.29
SCN1A-208ENST00000625916 ZNF24P17028 368 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 ZNF43P17038 809 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 IL32P24001 234 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 HLA-DMAP28067 261 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 HNRNPH3P31942 346 aaKnown RBP0.74□□□□□ -2.29
SCN1A-208ENST00000625916 CMC4P56277 68 aaPredicted RBP0.74□□□□□ -2.29
SCN1A-208ENST00000625916 TAS2R46P59540 309 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 GPM6BQ13491 265 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 ART3Q13508 389 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 LUZP6Q538Z0 58 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 PPM1LQ5SGD2 360 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 APOBEC3HQ6NTF7 200 aaKnown RBP0.74□□□□□ -2.29
SCN1A-208ENST00000625916 NBPF5PQ86XG9 351 aaPredicted RBP0.74□□□□□ -2.29
SCN1A-208ENST00000625916 FAM71AQ8IYT1 594 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 SNX31Q8N9S9 440 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 LRRC75AQ8NAA5 344 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 GPR26Q8NDV2 337 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 OR6Q1Q8NGQ2 317 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 TMEM243Q9BU79 118 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 NUDT9Q9BW91 350 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 DUSP21Q9H596 190 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 LRRC40Q9H9A6 602 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 PSMC3IPQ9P2W1 217 aaPredicted RBP0.74□□□□□ -2.29
SCN1A-208ENST00000625916 HMGXB4Q9UGU5 601 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 STARD10Q9Y365 291 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 R4GN34 69 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 HELZ2Q9BYK8 2649 aaKnown RBP0.74□□□□□ -2.29
SCN1A-208ENST00000625916 PLXNB1O43157 2135 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 ANKRD12Q6UB98 2062 aa0.74□□□□□ -2.29
SCN1A-208ENST00000625916 AKNAQ7Z591 1439 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 XKRY2A2RUG3 117 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 SMCO2A6NFE2 343 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 C3orf84H3BNL1 204 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 TAAR5O14804 337 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 RAD51CO43502 376 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 SERPINB7O75635 380 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 TSPAN13O95857 204 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 PTMAP06454 111 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 POLR2IP36954 125 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 TAS2R43P59537 309 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 EIF3EP60228 445 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 RPL23AP62750 156 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 SP4Q02446 784 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 IL24Q13007 206 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 ILKQ13418 452 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 DDX39BQ13838 428 aaKnown RBP0.73□□□□□ -2.29
SCN1A-208ENST00000625916 CHRNA6Q15825 494 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 PSMD5Q16401 504 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 KRTAP21-3Q3LHN1 58 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 CPTPQ5TA50 214 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 C12orf54Q6X4T0 127 aa0.73□□□□□ -2.29
SCN1A-208ENST00000625916 CERS6Q6ZMG9 384 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms