RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 FCGR2AP12318 317 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 MSR1P21757 451 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 HSD11B1P28845 292 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 LHX2P50458 406 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 CCR9P51686 369 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 LSM6P62312 80 aaKnown RBP8.9□□□□□ -0.98
SS18-207ENST00000577636 ZNF45Q02386 682 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 HNRNPA0Q13151 305 aaKnown RBP8.9□□□□□ -0.98
SS18-207ENST00000577636 RNPS1Q15287 305 aaKnown RBP8.9□□□□□ -0.98
SS18-207ENST00000577636 KCNMB1Q16558 191 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 SGCAQ16586 387 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 PCK2Q16822 640 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 HSD17B12Q53GQ0 312 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 ZMAT1Q5H9K5 638 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 C10orf128Q5T292 105 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 P4HA3Q7Z4N8 544 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 CNEP1R1Q8N9A8 125 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 MAPK1IP1LQ8NDC0 245 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 ACOT12Q8WYK0 555 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 ROBO4Q8WZ75 1007 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 KCNS3Q9BQ31 491 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 NXF2Q9GZY0 626 aaKnown RBP8.9□□□□□ -0.98
SS18-207ENST00000577636 PIGMQ9H3S5 423 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 NIPAL2Q9H841 368 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 PALMDQ9NP74 551 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 CENPMQ9NSP4 180 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 ADAM30Q9UKF2 790 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 FLVCR1Q9Y5Y0 555 aa8.9□□□□□ -0.98
SS18-207ENST00000577636 SIRT4Q9Y6E7 314 aaPredicted RBP8.9□□□□□ -0.98
SS18-207ENST00000577636 HRNRQ86YZ3 2850 aaPredicted RBP8.9□□□□□ -0.99
SS18-207ENST00000577636 TRAV1-2A0A0B4J238 106 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 ZNF716A6NP11 495 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 LOC110117498-PIK3R3F6TDL0 507 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 CRLF1O75462 422 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 UPK3AO75631 287 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 MPZL1O95297 269 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 APOC1P02654 83 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 CD2P06729 351 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 OCM2P0CE71 109 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 CPN1P15169 458 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 NPR2P20594 1047 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 DCTDP32321 178 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 OPRL1P41146 370 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 RPS27P42677 84 aaKnown RBP8.89□□□□□ -0.99
SS18-207ENST00000577636 PTH2RP49190 550 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 BMXP51813 675 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 CLDN18P56856 261 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 Q499Y3 187 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 DDI2Q5TDH0 399 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 OR7E24Q6IFN5 339 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 FDX2Q6P4F2 183 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 ZNF704Q6ZNC4 412 aaPredicted RBP8.89□□□□□ -0.99
SS18-207ENST00000577636 TMEM91Q6ZNR0 172 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 SPATC1Q76KD6 591 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 RHOUQ7L0Q8 258 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 LINC00346Q8IVM7 164 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 C20orf196Q8IYI0 205 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 TMEM123Q8N131 208 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 OR2G2Q8NGZ5 317 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 GPR148Q8TDV2 347 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 RNF128Q8TEB7 428 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 TSEN15Q8WW01 171 aaKnown RBP8.89□□□□□ -0.99
SS18-207ENST00000577636 WNT2BQ93097 391 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 TMEM45BQ96B21 275 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 SLAMF6Q96DU3 332 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 TRMT61AQ96FX7 289 aaKnown RBP8.89□□□□□ -0.99
SS18-207ENST00000577636 PGLYRP3Q96LB9 341 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 ZNF385AQ96PM9 386 aaKnown RBP8.89□□□□□ -0.99
SS18-207ENST00000577636 NELFAQ9H3P2 528 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 SMURF1Q9HCE7 757 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 POLE4Q9NR33 117 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 CKLFQ9UBR5 152 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 CYB5R1Q9UHQ9 305 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 METRNQ9UJH8 293 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 ING1Q9UK53 422 aaPredicted RBP8.89□□□□□ -0.99
SS18-207ENST00000577636 NOSIPQ9Y314 301 aaKnown RBP8.89□□□□□ -0.99
SS18-207ENST00000577636 LRP12Q9Y561 859 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 ARID1AO14497 2285 aa8.89□□□□□ -0.99
SS18-207ENST00000577636 HIVEP2P31629 2446 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 IGKV3D-15A0A087WSY6 115 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 DEFB108AA8MXU0 73 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 ZNF878C9JN71 531 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 ZFPL1O95159 310 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 ABHD16AO95870 558 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 RAB3BP20337 219 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 SELENOPP49908 381 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 PSMD7P51665 324 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 ZNF133P52736 654 aaPredicted RBP8.88□□□□□ -0.99
SS18-207ENST00000577636 PCBD1P61457 104 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 GRB2P62993 217 aaKnown RBP8.88□□□□□ -0.99
SS18-207ENST00000577636 PPP3R1P63098 170 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 MRPS34P82930 218 aaKnown RBP8.88□□□□□ -0.99
SS18-207ENST00000577636 BCL2L15Q5TBC7 163 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 LRFN4Q6PJG9 635 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 ZIC4Q8N9L1 334 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 GJC3Q8NFK1 279 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 RNF133Q8WVZ7 376 aa8.88□□□□□ -0.99
SS18-207ENST00000577636 KCTD12Q96CX2 325 aaKnown RBP8.88□□□□□ -0.99
SS18-207ENST00000577636 ZNF845Q96IR2 970 aaPredicted RBP8.88□□□□□ -0.99
SS18-207ENST00000577636 C4orf45Q96LM5 186 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms