RNA–Protein interactions for RNA: ENST00000565038.1

PALB2-203, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 344 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-203ENST00000565038 ZNF98A6NK75 572 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 GABRR3A8MPY1 467 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 BTNL10A8MVZ5 291 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 NDUFC2-KCTD14E9PQ53 114 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 SEMA3DO95025 777 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 NDUFB10O96000 172 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 ZNF24P17028 368 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 U2AF2P26368 475 aaKnown RBP eCLIP1.92□□□□□ -2.1
PALB2-203ENST00000565038 TGFBR1P36897 503 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 ACLYP53396 1101 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 SYNJ2BPP57105 145 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 RPL23P62829 140 aaKnown RBP1.92□□□□□ -2.1
PALB2-203ENST00000565038 CCNA1P78396 465 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 CHST4Q8NCG5 386 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 OR11H7Q8NGC8 314 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 OR13C2Q8NGS9 318 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 TMEM230Q96A57 120 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 RSG1Q9BU20 258 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 NT5C3AQ9H0P0 336 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 EXOSC4Q9NPD3 245 aaKnown RBP1.92□□□□□ -2.1
PALB2-203ENST00000565038 HRASLS2Q9NWW9 162 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 LGALS13Q9UHV8 139 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 CARHSP1Q9Y2V2 147 aaKnown RBP1.92□□□□□ -2.1
PALB2-203ENST00000565038 NUP155O75694 1391 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 NID2Q14112 1375 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 PALLDQ8WX93 1383 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 KIF15Q9NS87 1388 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 TMEM2Q9UHN6 1383 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 TCOF1Q13428 1488 aaKnown RBP1.92□□□□□ -2.1
PALB2-203ENST00000565038 KIDINS220Q9ULH0 1771 aa1.92□□□□□ -2.1
PALB2-203ENST00000565038 NPATQ14207 1427 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 CNTLNQ9NXG0 1405 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 ZMYM4Q5VZL5 1548 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 ABCA6Q8N139 1617 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 ALKQ9UM73 1620 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 LRRIQ1Q96JM4 1722 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 CTTNBP2Q8WZ74 1663 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 A2ML1A8K2U0 1454 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 CCDC18Q5T9S5 1454 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 LRRC9Q6ZRR7 1453 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 IGHV3OR16-8A0A075B7F1 116 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 IGKV2-24A0A0C4DH68 120 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 TMEM120BA0PK00 339 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 KRBOX1C9JBD0 128 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 SMKR1H3BMG3 65 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 P0C880 135 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 ATF6P18850 670 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 GFERP55789 205 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 STXBP1P61764 594 aaKnown RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 RPS23P62266 143 aaKnown RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 RBX1P62877 108 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 PRR3P79522 188 aaKnown RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 FUT5Q11128 374 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 DDX39BQ13838 428 aaKnown RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 ZNF266Q14584 549 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 PPP1R7Q15435 360 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 ADNP2Q6IQ32 1131 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 SLC8B1Q6J4K2 584 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 DEFB132Q7Z7B7 95 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 MRPL55Q7Z7F7 128 aaKnown RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 SPANXA2-OT1Q8N9U9 137 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 C11orf72Q8NBR9 251 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 TMEM104Q8NE00 496 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 DCPSQ96C86 337 aaKnown RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 ECHDC3Q96DC8 303 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 MYCBPQ99417 103 aaPredicted RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 CDX2Q99626 313 aaPredicted RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 ILKAPQ9H0C8 392 aaPredicted RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 RACGAP1Q9H0H5 632 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 NEUROG2Q9H2A3 272 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 ZNF586Q9NXT0 402 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 C21orf62Q9NYP8 219 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 ASB3Q9Y575 518 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 SUPT6HQ7KZ85 1726 aaKnown RBP1.91□□□□□ -2.1
PALB2-203ENST00000565038 ABCC1P33527 1531 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 FAM135BQ49AJ0 1406 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 VPS8Q8N3P4 1428 aa1.91□□□□□ -2.1
PALB2-203ENST00000565038 KDM5CP41229 1560 aa1.9□□□□□ -2.1
PALB2-203ENST00000565038 CAMSAP2Q08AD1 1489 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 ANKRD30AQ9BXX3 1397 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 COL5A1P20908 1838 aaPredicted RBP1.9□□□□□ -2.11
PALB2-203ENST00000565038 IGHV7-4-1A0A0J9YVY3 117 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 LYRM9A8MSI8 78 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 CDC40O60508 579 aaKnown RBP eCLIP1.9□□□□□ -2.11
PALB2-203ENST00000565038 ARG1P05089 322 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 RBM34P42696 430 aaKnown RBP1.9□□□□□ -2.11
PALB2-203ENST00000565038 CDH6P55285 790 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 ACTR3P61158 418 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 BAMBIQ13145 260 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 RBMY1FQ15415 496 aaKnown RBP1.9□□□□□ -2.11
PALB2-203ENST00000565038 SSX2Q16385 188 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 TAF9Q16594 264 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 UBE2UQ5VVX9 321 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 SPINT4Q6UDR6 99 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 C12orf54Q6X4T0 127 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 CERS6Q6ZMG9 384 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 CMTM1Q8IZ96 169 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 CSGALNACT2Q8N6G5 542 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 APCDD1LQ8NCL9 501 aa1.9□□□□□ -2.11
PALB2-203ENST00000565038 OR52E2Q8NGJ4 325 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms