RNA–Protein interactions for RNA: ENST00000565038.1

PALB2-203, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 344 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-203ENST00000565038 AEBP2Q6ZN18 517 aaPredicted RBP23.25■■□□□ 1.31
PALB2-203ENST00000565038 CHIC1Q5VXU3 224 aa22.68■■□□□ 1.22
PALB2-203ENST00000565038 PHF23Q9BUL5 403 aaPredicted RBP19.99■□□□□ 0.79
PALB2-203ENST00000565038 SENP3Q9H4L4 574 aaPredicted RBP19.67■□□□□ 0.74
PALB2-203ENST00000565038 PLPPR3Q6T4P5 718 aa18.41■□□□□ 0.54
PALB2-203ENST00000565038 FOXD1Q16676 465 aa18.31■□□□□ 0.52
PALB2-203ENST00000565038 PPP6R1Q9UPN7 881 aa17.65■□□□□ 0.42
PALB2-203ENST00000565038 ADRA2BP18089 450 aa17.64■□□□□ 0.41
PALB2-203ENST00000565038 PIAS4Q8N2W9 510 aaPredicted RBP17.26■□□□□ 0.35
PALB2-203ENST00000565038 MSH5O43196 834 aa16.81■□□□□ 0.28
PALB2-203ENST00000565038 PPP4R3CPQ6ZMV5 832 aa16.26■□□□□ 0.19
PALB2-203ENST00000565038 SCAF1Q9H7N4 1312 aaKnown RBP16.07■□□□□ 0.16
PALB2-203ENST00000565038 MAPK8IP2Q13387 824 aaPredicted RBP16.02■□□□□ 0.16
PALB2-203ENST00000565038 KCNA4P22459 653 aa15.93■□□□□ 0.14
PALB2-203ENST00000565038 NCBP3Q53F19 620 aaKnown RBP15.8■□□□□ 0.12
PALB2-203ENST00000565038 CNKSR2Q8WXI2 1034 aa15.77■□□□□ 0.12
PALB2-203ENST00000565038 DMRT2Q9Y5R5 561 aa15.71■□□□□ 0.11
PALB2-203ENST00000565038 NPM3O75607 178 aaKnown RBP15.6■□□□□ 0.09
PALB2-203ENST00000565038 RNF216Q9NWF9 866 aaPredicted RBP15.45■□□□□ 0.06
PALB2-203ENST00000565038 HOXD11P31277 338 aaPredicted RBP15.38■□□□□ 0.05
PALB2-203ENST00000565038 POTEDQ86YR6 584 aa15.33■□□□□ 0.04
PALB2-203ENST00000565038 SLC4A1APQ9BWU0 796 aaKnown RBP15.15■□□□□ 0.02
PALB2-203ENST00000565038 DCAF8L1A6NGE4 600 aa15.11■□□□□ 0.01
PALB2-203ENST00000565038 DNAJC5BQ9UF47 199 aa15.04■□□□□ -0
PALB2-203ENST00000565038 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
PALB2-203ENST00000565038 SLC4A2P04920 1241 aa14.74□□□□□ -0.05
PALB2-203ENST00000565038 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.71□□□□□ -0.052e-6■□□□□ 9.7
PALB2-203ENST00000565038 ZBTB22O15209 634 aa14.66□□□□□ -0.06
PALB2-203ENST00000565038 FOXD4L1Q9NU39 408 aa14.6□□□□□ -0.07
PALB2-203ENST00000565038 CSRNP3Q8WYN3 585 aa14.57□□□□□ -0.08
PALB2-203ENST00000565038 U3KPZ7 1027 aaPredicted RBP14.46□□□□□ -0.09
PALB2-203ENST00000565038 RNF39Q9H2S5 420 aa14.43□□□□□ -0.1
PALB2-203ENST00000565038 MYCNP04198 464 aaPredicted RBP14.39□□□□□ -0.11
PALB2-203ENST00000565038 C1QBPQ07021 282 aaKnown RBP14.23□□□□□ -0.13
PALB2-203ENST00000565038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.22□□□□□ -0.13
PALB2-203ENST00000565038 HNRNPUL2Q1KMD3 747 aaKnown RBP14.22□□□□□ -0.13
PALB2-203ENST00000565038 SAMD1Q6SPF0 538 aaPredicted RBP14.19□□□□□ -0.14
PALB2-203ENST00000565038 CACNB1Q02641 598 aaPredicted RBP14.08□□□□□ -0.16
PALB2-203ENST00000565038 SPINK5Q9NQ38 1064 aaPredicted RBP14.08□□□□□ -0.16
PALB2-203ENST00000565038 ATF5Q9Y2D1 282 aaPredicted RBP14.08□□□□□ -0.16
PALB2-203ENST00000565038 ATXN8OSP0DMR3 200 aa14.06□□□□□ -0.16
PALB2-203ENST00000565038 APLP2Q06481 763 aa14.05□□□□□ -0.16
PALB2-203ENST00000565038 CAPN15O75808 1086 aa14.02□□□□□ -0.17
PALB2-203ENST00000565038 TRHP20396 242 aaPredicted RBP13.97□□□□□ -0.17
PALB2-203ENST00000565038 ZNF219Q9P2Y4 722 aaPredicted RBP13.89□□□□□ -0.19
PALB2-203ENST00000565038 ABCB7O75027 752 aa13.78□□□□□ -0.2
PALB2-203ENST00000565038 DSG3P32926 999 aa13.75□□□□□ -0.21
PALB2-203ENST00000565038 POLA2Q14181 598 aa13.73□□□□□ -0.21
PALB2-203ENST00000565038 MKRN4PQ13434 485 aaPredicted RBP13.44□□□□□ -0.26
PALB2-203ENST00000565038 ZBTB12Q9Y330 459 aaPredicted RBP13.43□□□□□ -0.26
PALB2-203ENST00000565038 FBLN2P98095 1184 aa13.42□□□□□ -0.26
PALB2-203ENST00000565038 OSCARQ8IYS5 282 aa13.26□□□□□ -0.29
PALB2-203ENST00000565038 FKBP8Q14318 412 aa13.19□□□□□ -0.3
PALB2-203ENST00000565038 SPDYE4A6NLX3 237 aa13.14□□□□□ -0.31
PALB2-203ENST00000565038 SPDYE2BA6NHP3 402 aa13.09□□□□□ -0.31
PALB2-203ENST00000565038 SPDYE6P0CI01 402 aa13.09□□□□□ -0.31
PALB2-203ENST00000565038 SPDYE2Q495Y8 402 aa13.09□□□□□ -0.31
PALB2-203ENST00000565038 ZNF692Q9BU19 519 aaPredicted RBP13.08□□□□□ -0.32
PALB2-203ENST00000565038 RBM42Q9BTD8 480 aaKnown RBP13.06□□□□□ -0.32
PALB2-203ENST00000565038 SSUH2Q9Y2M2 353 aa12.99□□□□□ -0.33
PALB2-203ENST00000565038 PABPN1Q86U42 306 aaKnown RBP eCLIP12.92□□□□□ -0.34
PALB2-203ENST00000565038 AKT1S1Q96B36 256 aa12.92□□□□□ -0.34
PALB2-203ENST00000565038 PROM2Q8N271 834 aa12.87□□□□□ -0.35
PALB2-203ENST00000565038 REM2Q8IYK8 340 aaPredicted RBP12.83□□□□□ -0.36
PALB2-203ENST00000565038 SPDYE1Q8NFV5 336 aaPredicted RBP12.71□□□□□ -0.37
PALB2-203ENST00000565038 CLEC11AQ9Y240 323 aa12.71□□□□□ -0.37
PALB2-203ENST00000565038 PITPNM1O00562 1244 aa12.69□□□□□ -0.38
PALB2-203ENST00000565038 STAG3Q9UJ98 1225 aa12.65□□□□□ -0.38
PALB2-203ENST00000565038 FBXO3Q9UK99 471 aa12.65□□□□□ -0.38
PALB2-203ENST00000565038 PRR29P0C7W0 189 aa12.57□□□□□ -0.4
PALB2-203ENST00000565038 CHRDL2Q6WN34 429 aa12.55□□□□□ -0.4
PALB2-203ENST00000565038 VASPP50552 380 aaPredicted RBP12.52□□□□□ -0.41
PALB2-203ENST00000565038 MIER1Q8N108 512 aa12.47□□□□□ -0.41
PALB2-203ENST00000565038 PLCD3Q8N3E9 789 aa12.46□□□□□ -0.41
PALB2-203ENST00000565038 FXR2P51116 673 aaKnown RBP eCLIP12.42□□□□□ -0.425e-6■■■□□ 14.9
PALB2-203ENST00000565038 CHADLQ6NUI6 762 aa12.41□□□□□ -0.42
PALB2-203ENST00000565038 PIP4P2Q8N4L2 257 aa12.41□□□□□ -0.42
PALB2-203ENST00000565038 CREBZFQ9NS37 354 aa12.41□□□□□ -0.42
PALB2-203ENST00000565038 PRKAR2AP13861 404 aaKnown RBP12.37□□□□□ -0.43
PALB2-203ENST00000565038 IFNLR1Q8IU57 520 aaPredicted RBP12.37□□□□□ -0.43
PALB2-203ENST00000565038 PLEKHG5O94827 1062 aa12.35□□□□□ -0.43
PALB2-203ENST00000565038 KLHL34Q8N239 644 aa12.33□□□□□ -0.44
PALB2-203ENST00000565038 MNX1P50219 401 aaPredicted RBP12.27□□□□□ -0.45
PALB2-203ENST00000565038 FARP1Q9Y4F1 1045 aaPredicted RBP12.25□□□□□ -0.45
PALB2-203ENST00000565038 ZBTB47Q9UFB7 747 aaPredicted RBP12.24□□□□□ -0.45
PALB2-203ENST00000565038 SPOCK2Q92563 424 aa12.19□□□□□ -0.46
PALB2-203ENST00000565038 NPM1P06748 294 aaKnown RBP eCLIP12.18□□□□□ -0.46
PALB2-203ENST00000565038 POTEHQ6S545 545 aa12.14□□□□□ -0.47
PALB2-203ENST00000565038 NUBP1P53384 320 aa12.13□□□□□ -0.47
PALB2-203ENST00000565038 RASEFQ8IZ41 740 aa12.1□□□□□ -0.47
PALB2-203ENST00000565038 DCAF8Q5TAQ9 597 aa12.04□□□□□ -0.48
PALB2-203ENST00000565038 TSPYL2Q9H2G4 693 aaPredicted RBP12.04□□□□□ -0.48
PALB2-203ENST00000565038 CIZ1Q9ULV3 898 aaPredicted RBP12.04□□□□□ -0.48
PALB2-203ENST00000565038 HAX1O00165 279 aa12.02□□□□□ -0.49
PALB2-203ENST00000565038 CD44P16070 742 aaKnown RBP12.02□□□□□ -0.49
PALB2-203ENST00000565038 RTN4Q9NQC3 1192 aaKnown RBP12.02□□□□□ -0.49
PALB2-203ENST00000565038 FAM212AQ96EL1 285 aa12.01□□□□□ -0.49
PALB2-203ENST00000565038 C19orf67A6NJJ6 358 aa12□□□□□ -0.49
PALB2-203ENST00000565038 AMER1Q5JTC6 1135 aaPredicted RBP11.99□□□□□ -0.49
PALB2-203ENST00000565038 GSE1Q14687 1217 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms