RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 ISOC2Q96AB3 205 aa12.81□□□□□ -0.36
SFSWAP-210ENST00000541286 PARP12Q9H0J9 701 aaKnown RBP12.81□□□□□ -0.36
SFSWAP-210ENST00000541286 NXF5Q9H1B4 397 aaKnown RBP12.81□□□□□ -0.36
SFSWAP-210ENST00000541286 TLN1Q9Y490 2541 aaKnown RBP12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 OR2AT4A6NND4 320 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 EIF1AYO14602 144 aaKnown RBP12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 CDC40O60508 579 aaKnown RBP eCLIP12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 ACY1Q03154 408 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 AVPI1Q5T686 147 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 CDC6Q99741 560 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 C20orf24Q9BUV8 137 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 MED9Q9NWA0 146 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 RASL12Q9NYN1 266 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 CGGBP1Q9UFW8 167 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 IL17BQ9UHF5 180 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 ANKRD20A5PA0PJZ0 165 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 FITM1A5D6W6 292 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 C2orf72A6NCS6 295 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 OR6C65A6NJZ3 312 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 RENP00797 406 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 ZNF74Q16587 644 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 SLC16A9Q7RTY1 509 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 TMEM200AQ86VY9 491 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 JAGN1Q8N5M9 183 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 CASTOR1Q8WTX7 329 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 EDARADDQ8WWZ3 215 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 METTL21AQ8WXB1 218 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 BARX1Q9HBU1 254 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 OR2S2Q9NQN1 319 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 CACNA1AO00555 2505 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 DOCK10Q96BY6 2186 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 ITPR1Q14643 2758 aa12.8□□□□□ -0.36
SFSWAP-210ENST00000541286 EEF1E1-BLOC1S5C9J1V9 151 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 SLC16A7O60669 478 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 CXCR1P25024 350 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 EIF1AXP47813 144 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 GABREP78334 506 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 GPR148Q8TDV2 347 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 MIB2Q96AX9 1013 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 PRRX2Q99811 253 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 KLK13Q9UKR3 277 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 EPG5Q9HCE0 2579 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 ARPC3O15145 178 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 UPK3AO75631 287 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 WISP1O95388 367 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 ATP1B3P54709 279 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 PPIAP62937 165 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 MESTQ5EB52 335 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 WBP2NLQ6ICG8 309 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 RHBDD2Q6NTF9 364 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 TMEM205Q6UW68 189 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 KCTD9Q7L273 389 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 LILRB2Q8N423 598 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 TAAR8Q969N4 342 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 TSPAN32Q96QS1 320 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 INTS14Q96SY0 518 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 MMP25Q9NPA2 562 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 POLE3Q9NRF9 147 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 PCNX3Q9H6A9 2034 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 OR5H14A6NHG9 310 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 RAB40ALP0C0E4 278 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 CPN1P15169 458 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 TCN2P20062 427 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 MAPK3P27361 379 aaPredicted RBP12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 FAUP35544 74 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 CAPZA1P52907 286 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 DHODHQ02127 395 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 SNTB1Q13884 538 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 ACER2Q5QJU3 275 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 C5orf46Q6UWT4 87 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 UNQ9370/PRO34162Q6UXP9 181 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 MARCH3Q86UD3 253 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 STEAP2Q8NFT2 490 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 OR6K3Q8NGY3 331 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 TMED6Q8WW62 240 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 RAB40AQ8WXH6 277 aa12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 LMF2Q9BU23 707 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-210ENST00000541286 A0A0B4J2A0 478 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 C13orf42A0A1B0GVH6 325 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 SDHAP31040 664 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 SPOCK1Q08629 439 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 FABP9Q0Z7S8 132 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 ZNF141Q15928 474 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 CDCP2Q5VXM1 449 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 ZNF385CQ66K41 422 aaPredicted RBP12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 SLC29A4Q7RTT9 530 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 KRT77Q7Z794 578 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 C14orf79Q96F83 325 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 RTN4RQ9BZR6 473 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 SLC25A32Q9H2D1 315 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 ZNF629Q9UEG4 869 aaPredicted RBP12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 SHPKQ9UHJ6 478 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 NOP16Q9Y3C1 178 aaKnown RBP12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 PTRH2Q9Y3E5 179 aaKnown RBP12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 FREM3P0C091 2139 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 OR14I1A6ND48 311 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 NAP1L6A6NFF2 107 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 HMSDA8MTL9 139 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 CTDSPLO15194 276 aa12.78□□□□□ -0.36
SFSWAP-210ENST00000541286 ZNF264O43296 627 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms