RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PCBD2Q9H0N5 130 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 RAB1BQ9H0U4 201 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 NXF3Q9H4D5 531 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 PTGES2Q9H7Z7 377 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 EFCAB1Q9HAE3 211 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 NMNAT1Q9HAN9 279 aaPredicted RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 LPAR2Q9HBW0 351 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 ZFP14Q9HCL3 533 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 DYRK4Q9NR20 520 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 IMP3Q9NV31 184 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 MCUBQ9NWR8 336 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 LYARQ9NX58 379 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 MS4A12Q9NXJ0 267 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 USE1Q9NZ43 259 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PTTG3PQ9NZH4 202 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PDP1Q9P0J1 537 aaPredicted RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 IFNKQ9P0W0 207 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PISDQ9UG56 409 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 OPN4Q9UHM6 478 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PHF11Q9UIL8 331 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 SCP2D1Q9UJQ7 156 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 PURGQ9UJV8 347 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 NDRG2Q9UN36 371 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 SLC22A13Q9Y226 551 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 STRAPQ9Y3F4 350 aaKnown RBP1.42□□□□□ -2.18
NUP54-208ENST00000508604 OR51B4Q9Y5P0 310 aa1.42□□□□□ -2.18
NUP54-208ENST00000508604 MED14O60244 1454 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ATP7BP35670 1465 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TEX14Q8IWB6 1497 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CDK12Q9NYV4 1490 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 ABCC4O15439 1325 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 EFCAB6Q5THR3 1501 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 EHBP1L1Q8N3D4 1523 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 DUOX2Q9NRD8 1548 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ARHGEF10O15013 1369 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 MYH1P12882 1939 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 DIP2AQ14689 1571 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 HECW2Q9P2P5 1572 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 A0A1B0GUL6 1792 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CHD5Q8TDI0 1954 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RGS12O14924 1447 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 PLCH2O75038 1416 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 C9orf84Q5VXU9 1444 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 A0A087WXM4 84 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TRBV2A0A0J9YWF9 115 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 C17orf51A8MQB3 221 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 A8MUA0 341 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 MKRN2OSH3BPM6 223 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 HAS3O00219 553 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 DFFAO00273 331 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 FOXE1O00358 373 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 COPEO14579 308 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR7A17O14581 309 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ARPC5O15511 151 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 VPS26AO75436 327 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SCGB2A1O75556 95 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 IFNA7P01567 189 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 IFNA17P01571 189 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ABHD2P08910 425 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 IL7P13232 177 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 IFI30P13284 250 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 AREGP15514 252 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ATP6V1B2P21281 511 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TUBG1P23258 451 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 UCP1P25874 307 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 DPP4P27487 766 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SLC6A1P30531 599 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SDC4P31431 198 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 S100A11P31949 105 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 FOXN2P32314 431 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 HPCAL1P37235 193 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RFC3P40938 356 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RPS5P46782 204 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 CNN1P51911 297 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 TMEM33P57088 247 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RAB25P57735 213 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 TAS2R39P59534 338 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RAB2AP61019 212 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 PKIAP61925 76 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RAB11AP62491 216 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RAP1AP62834 184 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 HERVK_113P63132 956 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 CCL7P80098 99 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 GTF2BQ00403 316 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SLAMF1Q13291 335 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SNTB2Q13425 540 aaKnown RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 MEF2DQ14814 521 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 SLC9A3R2Q15599 337 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 OR1C1Q15619 314 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 VAMP3Q15836 100 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 RAB11BQ15907 218 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 GUCA2BQ16661 112 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 EXOC3L4Q17RC7 722 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ZNF630Q2M218 657 aaPredicted RBP1.41□□□□□ -2.18
NUP54-208ENST00000508604 ZNF181Q2M3W8 571 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 DCAF4L1Q3SXM0 396 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ACSBG2Q5FVE4 666 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 FBXW9Q5XUX1 488 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 LPCAT3Q6P1A2 487 aa1.41□□□□□ -2.18
NUP54-208ENST00000508604 ULK3Q6PHR2 472 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms