RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ZNF121P58317 390 aaPredicted RBP12.43□□□□□ -0.42
CUX1-209ENST00000487284 SF3B4Q15427 424 aaKnown RBP eCLIP12.43□□□□□ -0.42
CUX1-209ENST00000487284 RGS21Q2M5E4 152 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 ELFN2Q5R3F8 820 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 ASPHD2Q6ICH7 369 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 XKRXQ6PP77 449 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 FAM131AQ6UXB0 335 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.43□□□□□ -0.42
CUX1-209ENST00000487284 LYSMD2Q8IV50 215 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 GCNT2Q8N0V5 402 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 TRMT10AQ8TBZ6 339 aaKnown RBP12.43□□□□□ -0.42
CUX1-209ENST00000487284 WNT2BQ93097 391 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 BRD7Q9NPI1 651 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 SH3BGRL2Q9UJC5 107 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 INTS1Q8N201 2190 aaKnown RBP12.42□□□□□ -0.42
CUX1-209ENST00000487284 MBD3L4A6NDZ8 208 aaPredicted RBP12.42□□□□□ -0.42
CUX1-209ENST00000487284 MBD3L3A6NE82 208 aaPredicted RBP12.42□□□□□ -0.42
CUX1-209ENST00000487284 MBD3L5A6NJ08 208 aaPredicted RBP12.42□□□□□ -0.42
CUX1-209ENST00000487284 P2RY10O00398 339 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 B4GALT1P15291 398 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 ELK1P19419 428 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 CFPP27918 469 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 AGTR1P30556 359 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 CX3CR1P49238 355 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 PSMD7P51665 324 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 RIN1Q13671 783 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 RAB35Q15286 201 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 ZNF627Q7L945 461 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 PRSS45Q7RTY3 260 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 SLC22A24Q8N4F4 322 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 ZNF433Q8N7K0 673 aaPredicted RBP12.42□□□□□ -0.42
CUX1-209ENST00000487284 SAMD12Q8N8I0 201 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 OR13C3Q8NGS6 347 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 MBD3L2Q8NHZ7 208 aaPredicted RBP12.42□□□□□ -0.42
CUX1-209ENST00000487284 APH1AQ96BI3 265 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 GMPPAQ96IJ6 420 aaPredicted RBP12.42□□□□□ -0.42
CUX1-209ENST00000487284 SH3GL3Q99963 347 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 WACQ9BTA9 647 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 MRI1Q9BV20 369 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 HDHD2Q9H0R4 259 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 ABCB10Q9NRK6 738 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 CYSLTR2Q9NS75 346 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 FOXJ3Q9UPW0 622 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 SLC5A6Q9Y289 635 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 CHD6Q8TD26 2715 aa12.42□□□□□ -0.42
CUX1-209ENST00000487284 A0A1B0GTI1 187 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 DOK2O60496 412 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 SS18L1O75177 396 aaPredicted RBP12.41□□□□□ -0.42
CUX1-209ENST00000487284 KRT33AO76009 404 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 TOXO94900 526 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 PAHP00439 452 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 EIF4EP06730 217 aaKnown RBP12.41□□□□□ -0.42
CUX1-209ENST00000487284 HOXD4P09016 255 aaPredicted RBP12.41□□□□□ -0.42
CUX1-209ENST00000487284 IGFBP3P17936 291 aaPredicted RBP12.41□□□□□ -0.42
CUX1-209ENST00000487284 SCRN3Q0VDG4 424 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 STEAP3Q658P3 488 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 Q6ZNX1 250 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 NUFIP2Q7Z417 695 aaKnown RBP12.41□□□□□ -0.42
CUX1-209ENST00000487284 ZNF283Q8N7M2 679 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 GDPD1Q8N9F7 314 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 OR8B12Q8NGG6 310 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 CMTM3Q96MX0 182 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 PPP1R3EQ9H7J1 279 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 SPATA2Q9UM82 520 aa12.41□□□□□ -0.42
CUX1-209ENST00000487284 ANXA2P2A6NMY6 339 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 ZNF587BE7ETH6 402 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 SGCEO43556 437 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 IGHV3-9P01782 118 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 APOA1P02647 267 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 APOC1P02654 83 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 PRB1P04280 392 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 ANXA2P07355 339 aaKnown RBP12.4□□□□□ -0.42
CUX1-209ENST00000487284 SNRPBP14678 240 aaKnown RBP12.4□□□□□ -0.42
CUX1-209ENST00000487284 CCL1P22362 96 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 CRYGSP22914 178 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 PCBD1P61457 104 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 ECH1Q13011 328 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 GUSBP1Q15486 140 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 RSPO1Q2MKA7 263 aaPredicted RBP12.4□□□□□ -0.42
CUX1-209ENST00000487284 OR2A2Q6IF42 318 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 ZNF813Q6ZN06 617 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 OR5H6Q8NGV6 325 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 LGALS14Q8TCE9 139 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 GLRX2Q9NS18 164 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 ZNF275Q9NSD4 429 aaPredicted RBP12.4□□□□□ -0.42
CUX1-209ENST00000487284 PLEK2Q9NYT0 353 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 ZNF319Q9P2F9 582 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 CKLFQ9UBR5 152 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 RTTNQ86VV8 2226 aa12.4□□□□□ -0.42
CUX1-209ENST00000487284 RELNP78509 3460 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 A0A0B4J203 849 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 A0A1B0GVI7 797 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 OR6C6A6NF89 314 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 FAM25AB3EWG3 89 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 FAM25CB3EWG5 89 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 FAM25GB3EWG6 89 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 SYT7O43581 403 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 SYNGR3O43761 229 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 IGLV3-1P01715 115 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 MAS1P04201 325 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms