RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 NOXO1Q8NFA2 376 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 SLC26A10Q8NG04 563 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 OR11L1Q8NGX0 322 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 SUN5Q8TC36 379 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 RPS4Y2Q8TD47 263 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 BCAS4Q8TDM0 211 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.74□□□□□ -1.81
USP4-209ENST00000475873 PTP4A1Q93096 173 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 RNFT2Q96EX2 444 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 DUS3LQ96G46 650 aaKnown RBP3.74□□□□□ -1.81
USP4-209ENST00000475873 NOL4LQ96MY1 436 aaPredicted RBP3.74□□□□□ -1.81
USP4-209ENST00000475873 WFDC6Q9BQY6 131 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 DPY30Q9C005 99 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 HIPK2Q9H2X6 1198 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 MTHFD2LQ9H903 347 aaPredicted RBP3.74□□□□□ -1.81
USP4-209ENST00000475873 PTTG3PQ9NZH4 202 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 TMEM216Q9P0N5 145 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 ZNF443Q9Y2A4 671 aaPredicted RBP3.74□□□□□ -1.81
USP4-209ENST00000475873 SNX24Q9Y343 169 aa3.74□□□□□ -1.81
USP4-209ENST00000475873 PSMB11A5LHX3 300 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 ODF3BA8MYP8 253 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 RTL8CO15255 209 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 TRMUO75648 421 aaKnown RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 RHBDL1O75783 438 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 AGR2O95994 175 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 LINC00032P0C843 101 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 ADORA3P0DMS8 318 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 COX7A1P24310 79 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 CD24P25063 80 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 OR3A4PP47883 348 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 DYNLT3P51808 116 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 ZNF75DP51815 510 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 COPZ1P61923 177 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 GABPB1Q06547 395 aaPredicted RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 PMS2P11Q13670 270 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 KCNJ8Q15842 424 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 UAP1Q16222 522 aaPredicted RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 SSX2Q16385 188 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 DGUOKQ16854 277 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 GALNTL6Q49A17 601 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 RPS26P11Q5JNZ5 115 aaPredicted RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 BEND6Q5SZJ8 279 aaPredicted RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 ARMC4Q5T2S8 1044 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 INTS11Q5TA45 600 aaKnown RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 LGALS9CQ6DKI2 356 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 TMEM65Q6PI78 240 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 SLC25A47Q6Q0C1 308 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 CBLL1Q75N03 491 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 WDR86Q86TI4 376 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 C11orf53Q8IXP5 236 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 KLHL7Q8IXQ5 586 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 OR4Q3Q8NH05 313 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 OR5J2Q8NH18 312 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 OR6S1Q8NH40 331 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 OR52P1PQ8NH57 321 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 ACTRT1Q8TDG2 376 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 H1FXQ92522 213 aaKnown RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 HDAC2Q92769 488 aaKnown RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 ERGIC1Q969X5 290 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 ZNF582Q96NG8 517 aaPredicted RBP3.73□□□□□ -1.81
USP4-209ENST00000475873 C1orf50Q9BV19 199 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 DUSP26Q9BV47 211 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 DCLRE1BQ9H816 532 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 ISYNA1Q9NPH2 558 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 LZTFL1Q9NQ48 299 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 ATAD3AQ9NVI7 634 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 C1orf123Q9NWV4 160 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.73□□□□□ -1.81
USP4-209ENST00000475873 LINC00527Q9UJ94 153 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 PITPNC1Q9UKF7 332 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 NDUFAF1Q9Y375 327 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 RNF213Q63HN8 5207 aa3.73□□□□□ -1.81
USP4-209ENST00000475873 A0A0B4J203 849 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 TMEM233B4DJY2 109 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 SLC28A1O00337 649 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 RNASET2O00584 256 aaKnown RBP3.72□□□□□ -1.81
USP4-209ENST00000475873 DYNC1I1O14576 645 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 TPST2O60704 377 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 IGHG1P01857 330 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 IFNA6P05013 189 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 RPLP1P05386 114 aaKnown RBP3.72□□□□□ -1.81
USP4-209ENST00000475873 GSTA2P09210 222 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 CST2P09228 141 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 BTF3P20290 206 aaKnown RBP3.72□□□□□ -1.81
USP4-209ENST00000475873 BGNP21810 368 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 TUBG1P23258 451 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 ATP5F1P24539 256 aaPredicted RBP3.72□□□□□ -1.81
USP4-209ENST00000475873 SLC6A1P30531 599 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 ENTPD1P49961 510 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 ZNF84P51523 738 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 MVDP53602 400 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 CLRN1P58418 232 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 HPCAP84074 193 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 RSPO1Q2MKA7 263 aaPredicted RBP3.72□□□□□ -1.81
USP4-209ENST00000475873 LIN52Q52LA3 116 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 STUMQ69YW2 141 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 MZT2AQ6P582 158 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 C5orf46Q6UWT4 87 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 ACP7Q6ZNF0 438 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 FRMD7Q6ZUT3 714 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms