RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PRO1933Q9H354 126 aa10.47□□□□□ -0.73
CPSF3-202ENST00000460593 PHPT1Q9NRX4 125 aaPredicted RBP10.47□□□□□ -0.73
CPSF3-202ENST00000460593 FBXO7Q9Y3I1 522 aa10.47□□□□□ -0.73
CPSF3-202ENST00000460593 LRP12Q9Y561 859 aa10.47□□□□□ -0.73
CPSF3-202ENST00000460593 TIMM10BQ9Y5J6 103 aa10.47□□□□□ -0.73
CPSF3-202ENST00000460593 A0A1W2PP11 408 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 FOXS1O43638 330 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 RENP00797 406 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 S1PR1P21453 382 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 EIF1AXP47813 144 aaKnown RBP10.46□□□□□ -0.73
CPSF3-202ENST00000460593 CEBPGP53567 150 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 RAB2AP61019 212 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 BTG2P78543 158 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 NAAAQ02083 359 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 ZNHIT3Q15649 155 aaPredicted RBP10.46□□□□□ -0.73
CPSF3-202ENST00000460593 EEF1A1P5Q5VTE0 462 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 PRR22Q8IZ63 422 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 OR4K15Q8NH41 348 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 CTHRC1Q96CG8 243 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 RBM18Q96H35 190 aaKnown RBP10.46□□□□□ -0.73
CPSF3-202ENST00000460593 ZNF587Q96SQ5 575 aaPredicted RBP10.46□□□□□ -0.73
CPSF3-202ENST00000460593 OCSTAMPQ9BR26 566 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 TOLLIPQ9H0E2 274 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 CREBZFQ9NS37 354 aa10.46□□□□□ -0.73
CPSF3-202ENST00000460593 ZNF729A6NN14 1252 aaPredicted RBP10.46□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF727A8MUV8 499 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 MFNGO00587 321 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 ATXN7O15265 892 aaPredicted RBP10.46□□□□□ -0.74
CPSF3-202ENST00000460593 TMEM127O75204 238 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 IFNA2P01563 188 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 CTLA4P16410 223 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 GLRA1P23415 457 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 ITGA3P26006 1051 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 GLP1RP43220 463 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 RPS10P46783 165 aaKnown RBP10.46□□□□□ -0.74
CPSF3-202ENST00000460593 EGR3Q06889 387 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 GFI1BQ5VTD9 330 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 CA13Q8N1Q1 262 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 FAM160A2Q8N612 972 aaPredicted RBP10.46□□□□□ -0.74
CPSF3-202ENST00000460593 TSACCQ96A04 125 aaPredicted RBP10.46□□□□□ -0.74
CPSF3-202ENST00000460593 FGGYQ96C11 551 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 TGM7Q96PF1 710 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 ABHD6Q9BV23 337 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 FOXQ1Q9C009 403 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 RCL1Q9Y2P8 373 aaKnown RBP10.46□□□□□ -0.74
CPSF3-202ENST00000460593 WIF1Q9Y5W5 379 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 RFNGQ9Y644 331 aa10.46□□□□□ -0.74
CPSF3-202ENST00000460593 TRBV6-7A0A0A0MS04 114 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 URADA6NGE7 173 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 LDLRAD4O15165 306 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF354AO60765 605 aaPredicted RBP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 SCGB1D2O95969 90 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 GDI1P31150 447 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 HTR5AP47898 357 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 SULT1A1P50225 295 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 SPEM2Q0P670 501 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 TOMM34Q15785 309 aaPredicted RBP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ACTBL2Q562R1 376 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 PRSS54Q6PEW0 395 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 SPRED2Q7Z698 418 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 BCORP1Q8N888 145 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF565Q8N9K5 539 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 APCDD1LQ8NCL9 501 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 NT5CQ8TCD5 201 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 RTN4RQ9BZR6 473 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 TGIF2Q9GZN2 237 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 BANF2Q9H503 90 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 SLC17A5Q9NRA2 495 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 URGCP-MRPS24S4R325 110 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 SEC16AO15027 2179 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 WDFY3Q8IZQ1 3526 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 WRBO00258 174 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 KNG1P01042 644 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 CSTBP04080 98 aaKnown RBP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ADH1AP07327 375 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ACRP10323 421 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 NDUFB7P17568 137 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 DVL1P1P54792 670 aaPredicted RBP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 CLDN6P56747 220 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 SUPT4H1P63272 117 aaKnown RBP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 KIAA0141Q14154 515 aaPredicted RBP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 VITQ6UXI7 678 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF679Q8IYX0 411 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ZDHHC22Q8N966 263 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 CCDC54Q8NEL0 328 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 TM4SF19Q96DZ7 209 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 GPX7Q96SL4 187 aaPredicted RBP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 NMES1Q9C002 83 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 F5P12259 2224 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 FGF19O95750 216 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ASAH2BP0C7U1 165 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 CT45A8P0DMV1 189 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 CT45A9P0DMV2 189 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 IGFBP3P17936 291 aaPredicted RBP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 CCINQ13939 588 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 PNLIPRP3Q17RR3 467 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 CT45A2Q5DJT8 189 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF343Q6P1L6 599 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 FLVCR1-AS1Q8TAF5 88 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 TMEM41AQ96HV5 264 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms