RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 OR5D18Q8NGL1 313 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 OR13C9Q8NGT0 318 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 NUBPLQ8TB37 319 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 POC1BQ8TC44 478 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 OR51E1Q8TCB6 317 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 ST7LQ8TDW4 575 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 RAB40AQ8WXH6 277 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 HGDQ93099 445 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 ADAT3Q96EY9 351 aaPredicted RBP8.41□□□□□ -1.06
CUX1-206ENST00000437600 TRAF4Q9BUZ4 470 aaPredicted RBP8.41□□□□□ -1.06
CUX1-206ENST00000437600 VSX1Q9NZR4 365 aaPredicted RBP8.41□□□□□ -1.06
CUX1-206ENST00000437600 B3GAT1Q9P2W7 334 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 ASH2LQ9UBL3 628 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 CD1AP06126 327 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 PRSS3P35030 304 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 MNDAP41218 407 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 NBL1P41271 181 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 ZNF41P51814 821 aaPredicted RBP8.41□□□□□ -1.06
CUX1-206ENST00000437600 GRK1Q15835 563 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 AANATQ16613 207 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 ANKRD16Q6P6B7 361 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.41□□□□□ -1.06
CUX1-206ENST00000437600 CATSPERDQ86XM0 798 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 FAM219AQ8IW50 185 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 GALNT16Q8N428 558 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 WDSUB1Q8N9V3 476 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 OR5L2Q8NGL0 311 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 OR10S1Q8NGN2 331 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 STK35Q8TDR2 534 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 ASB10Q8WXI3 467 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 PHYHIPQ92561 330 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 SGK3Q96BR1 496 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 KCNK17Q96T54 332 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 HEXA-AS1Q9H8Q6 139 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 G6PC2Q9NQR9 355 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 C19orf25Q9UFG5 118 aaPredicted RBP8.41□□□□□ -1.06
CUX1-206ENST00000437600 ZNF230Q9UIE0 474 aaPredicted RBP8.41□□□□□ -1.06
CUX1-206ENST00000437600 ZNF407Q9C0G0 2248 aa8.41□□□□□ -1.06
CUX1-206ENST00000437600 MEIKINA0A087WXM9 373 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 LIPT2A6NK58 231 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 E9PLN8 166 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 CTDSPLO15194 276 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 KCNAB3O43448 404 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 JMJD7P0C870 316 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 COX6A1P12074 109 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 CRABP1P29762 137 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 H2BFSP57053 126 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 MC2RQ01718 297 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 RELQ04864 619 aaPredicted RBP8.4□□□□□ -1.06
CUX1-206ENST00000437600 BTN1A1Q13410 526 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 C21orf62-AS1Q17RA5 79 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 FAM209BQ5JX69 171 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 OLFML2AQ68BL7 652 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 MUC20Q8N307 709 aaPredicted RBP8.4□□□□□ -1.06
CUX1-206ENST00000437600 SLAMF6Q96DU3 332 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 SPACA9Q96E40 222 aaPredicted RBP8.4□□□□□ -1.06
CUX1-206ENST00000437600 FAM71F1Q96KD3 344 aaPredicted RBP8.4□□□□□ -1.06
CUX1-206ENST00000437600 CCNL2Q96S94 520 aaPredicted RBP8.4□□□□□ -1.06
CUX1-206ENST00000437600 RANBP3Q9H6Z4 567 aaPredicted RBP8.4□□□□□ -1.06
CUX1-206ENST00000437600 CNTD2Q9H8S5 307 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 EDARQ9UNE0 448 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 CPAMD8Q8IZJ3 1885 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 SVILO95425 2214 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 PTPRBP23467 1997 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 BSNQ9UPA5 3926 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 IGHV1-45A0A0A0MS14 117 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 ANKUB1A6NFN9 424 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 WIPF3A6NGB9 483 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 H7C417 338 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 ARPC5O15511 151 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 CD2P06729 351 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 GP1BAP07359 652 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 CCL3P10147 92 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 PTGDSP41222 190 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 LRRC37A5PQ49AS3 106 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 NAXEQ8NCW5 288 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 UCN2Q96RP3 112 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 CHST11Q9NPF2 352 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 FOXJ2Q9P0K8 574 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 PIPOXQ9P0Z9 390 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 COPZ2Q9P299 210 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 CKLFQ9UBR5 152 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 MTFP1Q9UDX5 166 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 HHLA2Q9UM44 414 aa8.4□□□□□ -1.06
CUX1-206ENST00000437600 EXPH5Q8NEV8 1989 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 NSG1A0A0A6YYJ2 146 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 LOC100289279A0A1B0GTE1 492 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 SLC17A2O00624 439 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 RAF1P04049 648 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 ACSM4P0C7M7 580 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 LCN1P31025 176 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 EXOSC2Q13868 293 aaKnown RBP8.4□□□□□ -1.07
CUX1-206ENST00000437600 SGCAQ16586 387 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 DCAF12Q5T6F0 453 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 GLDNQ6ZMI3 551 aaPredicted RBP8.4□□□□□ -1.07
CUX1-206ENST00000437600 TMEM156Q8N614 296 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 OR10H5Q8NGA6 315 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 NUDCD2Q8WVJ2 157 aa8.4□□□□□ -1.07
CUX1-206ENST00000437600 SLC25A28Q96A46 364 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms