RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 IDNKQ5T6J7 187 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF468Q5VIY5 522 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-229ENST00000557348 LRRN1Q6UXK5 716 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 KDM8Q8N371 416 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 DEFB124Q8NES8 71 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 C4orf45Q96LM5 186 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 DERL3Q96Q80 235 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 PDCD1LG2Q9BQ51 273 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 ABHD6Q9BV23 337 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF416Q9BWM5 594 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 SHISA3A0PJX4 238 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 OR4C45A6NMZ5 311 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 CDRT15L2A8MXV6 281 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 SMLR1H3BR10 107 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 OR2A4O95047 310 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 SRMP19623 302 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 CBX5P45973 191 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 DNASE1L1P49184 302 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 NANOS3P60323 173 aaKnown RBP11.25□□□□□ -0.61
SHMT2-229ENST00000557348 INSL4Q14641 139 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 TOMM20Q15388 145 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 KCNMB1Q16558 191 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 HIST3H3Q16695 136 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 OR5M1Q8NGP8 315 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 LILRB1Q8NHL6 650 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-229ENST00000557348 SFXN2Q96NB2 322 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 OR2A7Q96R45 310 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 OR14A2Q96R54 314 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 ELOVL3Q9HB03 270 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 TCF7L1Q9HCS4 588 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 NPDC1Q9NQX5 325 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-229ENST00000557348 FRRS1LQ9P0K9 344 aa11.25□□□□□ -0.61
SHMT2-229ENST00000557348 KLF13Q9Y2Y9 288 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-229ENST00000557348 KIF26BQ2KJY2 2108 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 PLSCR5A0PG75 271 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 LRRC3CA6NJW4 275 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 PRR32B1ATL7 298 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 MAGEB4O15481 346 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 SSNA1O43805 119 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 CD2P06729 351 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 THBS2P35442 1172 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 HOXA1P49639 335 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 SOX8P57073 446 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 SNTB2Q13425 540 aaKnown RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 SHEQ5VZ18 495 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF704Q6ZNC4 412 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 DTX1Q86Y01 620 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 OR2T35Q8NGX2 323 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 YIPF5Q969M3 257 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 MOB1AQ9H8S9 216 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 NOX4Q9NPH5 578 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 ING1Q9UK53 422 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 RCE1Q9Y256 329 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 R4GMQ9 66 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 ZFHX2Q9C0A1 2572 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 TTLL8A6PVC2 850 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 L7N2F9 121 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 PSMD9O00233 223 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 EPXP11678 715 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 GDF1P27539 372 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 MNDAP41218 407 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 CSNK1A1P48729 337 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF133P52736 654 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 CAV3P56539 151 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 B3GALT5-AS1P59052 145 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 GMFBP60983 142 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 FMODQ06828 376 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF169Q14929 603 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 SLC25A47Q6Q0C1 308 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 KLHL24Q6TFL4 600 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 GLCCI1Q86VQ1 547 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 FTMTQ8N4E7 242 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 CLRN3Q8NCR9 226 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 OR6M1Q8NGM8 313 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 OR2AJ1Q8NGZ0 328 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 SMIM4Q8WVI0 70 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 RNF133Q8WVZ7 376 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 CPNE4Q96A23 557 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 RNF166Q96A37 237 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-229ENST00000557348 SLC25A32Q9H2D1 315 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 C1orf198Q9H425 327 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 IFT22Q9H7X7 185 aa11.24□□□□□ -0.61
SHMT2-229ENST00000557348 SDK2Q58EX2 2172 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 A0A0G2JK05 382 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 CIB4A0PJX0 185 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 TRABD2BA6NFA1 517 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 G3V3Y1 287 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 EEF1E1O43324 174 aaKnown RBP11.23□□□□□ -0.61
SHMT2-229ENST00000557348 NCR1O76036 304 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 H2BFMP0C1H6 154 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 H2AFB1P0C5Y9 115 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 UBCP0CG48 685 aaKnown RBP11.23□□□□□ -0.61
SHMT2-229ENST00000557348 LIPCP11150 499 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 PPP3CBP16298 524 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 POU3F2P20265 443 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-229ENST00000557348 NFYAP23511 347 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-229ENST00000557348 SUCLG1P53597 346 aaKnown RBP11.23□□□□□ -0.61
SHMT2-229ENST00000557348 CLDN17P56750 224 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 LSM6P62312 80 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms