RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 NKX1-2Q9UD57 310 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-204ENST00000463487 M0R233 179 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 RRP9O43818 475 aaKnown RBP17.02■□□□□ 0.32
COL9A3-204ENST00000463487 MRPL3P09001 348 aaKnown RBP17.02■□□□□ 0.32
COL9A3-204ENST00000463487 ACSM4P0C7M7 580 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 PAX1P15863 534 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 CDKN1AP38936 164 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 PTH2RP49190 550 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 PPOXP50336 477 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 RIPK1Q13546 671 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 OCLNQ16625 522 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 NKPD1Q17RQ9 610 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 KRTAP27-1Q3LI81 207 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 OR10S1Q8NGN2 331 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 SLC25A40Q8TBP6 338 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 PERPQ96FX8 193 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 SYT3Q9BQG1 590 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 MRPL37Q9BZE1 423 aaKnown RBP17.02■□□□□ 0.32
COL9A3-204ENST00000463487 NIPAL2Q9H841 368 aa17.02■□□□□ 0.32
COL9A3-204ENST00000463487 ZNF670-ZNF695F2Z2N8 137 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 LCATP04180 440 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 PSKH1P11801 424 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 ALOX5APP20292 161 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 ATP5J2P56134 94 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 IL18R1Q13478 541 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 SPATA46Q5T0L3 261 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 MBNL2Q5VZF2 373 aaKnown RBP17.01■□□□□ 0.31
COL9A3-204ENST00000463487 SPATC1Q76KD6 591 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 KRT77Q7Z794 578 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 SLC35F2Q8IXU6 374 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 ZNF283Q8N7M2 679 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 OR51G2Q8NGK0 314 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 MARS2Q96GW9 593 aaKnown RBP17.01■□□□□ 0.31
COL9A3-204ENST00000463487 C1QTNF5Q9BXJ0 243 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 OR2J1Q9GZK6 312 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 MS4A5Q9H3V2 200 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 CGGBP1Q9UFW8 167 aaPredicted RBP17.01■□□□□ 0.31
COL9A3-204ENST00000463487 FZR1Q9UM11 496 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 POLQO75417 2590 aa17.01■□□□□ 0.31
COL9A3-204ENST00000463487 IGLV3-9A0A075B6K5 115 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 PLSCR5A0PG75 271 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 H0YAE9 185 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 DLGAP1O14490 977 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 NGFP01138 241 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 SBK2P0C263 348 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 OTX1P32242 354 aaPredicted RBP17■□□□□ 0.31
COL9A3-204ENST00000463487 LIPAP38571 399 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 MTNR1AP48039 350 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 ERVS71-1P61550 626 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 IL5RAQ01344 420 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 MST1LQ2TV78 715 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 ZMAT1Q5H9K5 638 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 SHEQ5VZ18 495 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 DEGS2Q6QHC5 323 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 ENTHD1Q8IYW4 607 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 KLF14Q8TD94 323 aaPredicted RBP17■□□□□ 0.31
COL9A3-204ENST00000463487 MYCBPQ99417 103 aaPredicted RBP17■□□□□ 0.31
COL9A3-204ENST00000463487 DOK1Q99704 481 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 VRK1Q99986 396 aaPredicted RBP17■□□□□ 0.31
COL9A3-204ENST00000463487 ADI1Q9BV57 179 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 MROQ9BYG7 248 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 RAB1BQ9H0U4 201 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 ADGRL4Q9HBW9 690 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 PCDHGB1Q9Y5G3 927 aa17■□□□□ 0.31
COL9A3-204ENST00000463487 TACC2O95359 2948 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 H0YJX3 145 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 ENTPD6O75354 484 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 ZNF254O75437 659 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 IGHV3-13P01766 116 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 OR2T7P0C7T2 308 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 CAPGP40121 348 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 OPRL1P41146 370 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 PRKXP51817 358 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 COLCA1Q6ZS62 124 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 OR2T27Q8NH04 317 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 RHOXF1Q8NHV9 184 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 UBE2FQ969M7 185 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 OPA3Q9H6K4 179 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 CYSLTR2Q9NS75 346 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 TAAR3PQ9P1P4 343 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 STARD10Q9Y365 291 aa16.99■□□□□ 0.31
COL9A3-204ENST00000463487 RRP15Q9Y3B9 282 aaKnown RBP16.99■□□□□ 0.31
COL9A3-204ENST00000463487 TMEM129A0AVI4 362 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 TIMM8AO60220 97 aaPredicted RBP16.98■□□□□ 0.31
COL9A3-204ENST00000463487 ATP6V1G2O95670 118 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 RAC2P15153 192 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 SELEP16581 610 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 CX3CR1P49238 355 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 ACTC1P68032 377 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 ACTA1P68133 377 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 RSPO1Q2MKA7 263 aaPredicted RBP16.98■□□□□ 0.31
COL9A3-204ENST00000463487 ZNF691Q5VV52 312 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 OR52H1Q8NGJ2 320 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 CXXC4Q9H2H0 198 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 IKZF2Q9UKS7 526 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 HSPE1-MOB4S4R3N1 261 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 RTTNQ86VV8 2226 aa16.98■□□□□ 0.31
COL9A3-204ENST00000463487 ANXA2P07355 339 aaKnown RBP16.97■□□□□ 0.31
COL9A3-204ENST00000463487 ADRA2AP08913 450 aa16.97■□□□□ 0.31
COL9A3-204ENST00000463487 CXCR4P61073 352 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms