RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FOXF1Q12946 379 aa10.73□□□□□ -0.69
USP1-201ENST00000339950 FZD5Q13467 585 aa10.73□□□□□ -0.69
USP1-201ENST00000339950 GLIPR1L1Q6UWM5 242 aa10.73□□□□□ -0.69
USP1-201ENST00000339950 CYYR1Q96J86 154 aa10.73□□□□□ -0.69
USP1-201ENST00000339950 CST11Q9H112 138 aa10.73□□□□□ -0.69
USP1-201ENST00000339950 FAM86C1Q9NVL1 165 aa10.73□□□□□ -0.69
USP1-201ENST00000339950 CLEC1BQ9P126 229 aa10.73□□□□□ -0.69
USP1-201ENST00000339950 PKDREJQ9NTG1 2253 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 TRAV1-2A0A0B4J238 106 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 LOC100289279A0A1B0GTE1 492 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 TMEM272A0A1B0GTI8 110 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 OGG1O15527 345 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ERCC1P07992 297 aaPredicted RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 RPA2P15927 270 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 PPICP45877 212 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 DNM1P34Q6PK57 102 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 MRGPREQ86SM8 312 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 UEVLDQ8IX04 471 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ZNF440Q8IYI8 595 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ZNF679Q8IYX0 411 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 PPP1R1CQ8WVI7 109 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 SLC46A1Q96NT5 459 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 C7orf66A4D0T2 115 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 PRAF2O60831 178 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 STK17BO94768 372 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 GLSO94925 669 aaPredicted RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 FAM157BP0CG42 384 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 SULT1A3P0DMM9 295 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 SULT1A4P0DMN0 295 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 RAB3AP20336 220 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 RAB6AP20340 208 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 NME2P22392 152 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 OTX2P32243 289 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 RGS19P49795 217 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 CLDN6P56747 220 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 HSD11B2P80365 405 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ACSM1Q08AH1 577 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 CLINT1Q14677 625 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 SGCBQ16585 318 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ADAM5Q6NVV9 412 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 H3F3CQ6NXT2 135 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 GLDNQ6ZMI3 551 aaPredicted RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 PRSS35Q8N3Z0 413 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 GPBAR1Q8TDU6 330 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ROBO4Q8WZ75 1007 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 CHRDQ9H2X0 955 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 AKIRIN1Q9H9L7 192 aaPredicted RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 SERINC1Q9NRX5 453 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 DOCK10Q96BY6 2186 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 MYO7BQ6PIF6 2116 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 TLCD2A6NGC4 264 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ADAP1O75689 374 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 TPPPO94811 219 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ZNF93P35789 620 aaPredicted RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 PPT1P50897 306 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ATP1B3P54709 279 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 EGR4Q05215 589 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 HLXQ14774 488 aaPredicted RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 EBPQ15125 230 aaKnown RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 TSC22D1Q15714 1073 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 C1orf53Q5VUE5 145 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 MEX3BQ6ZN04 569 aaKnown RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 OTOSQ8NHW6 89 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 SP7Q8TDD2 431 aaPredicted RBP10.72□□□□□ -0.69
USP1-201ENST00000339950 WWTR1Q9GZV5 400 aa10.72□□□□□ -0.69
USP1-201ENST00000339950 ABCA1O95477 2261 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 OR5H14A6NHG9 310 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 ZNF850A8MQ14 1090 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 ZNF208O43345 1280 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 SCRG1O75711 98 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 SERPINA5P05154 406 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 GUSBP08236 651 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 DPP4P27487 766 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 KIR3DL2P43630 455 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 H2BFSP57053 126 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 TAS2R19P59542 299 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 RPS4XP62701 263 aaKnown RBP10.71□□□□□ -0.69
USP1-201ENST00000339950 C19orf57Q0VDD7 668 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 PDZD11Q5EBL8 140 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 GPR139Q6DWJ6 353 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 PXT1Q8NFP0 134 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 OR4K15Q8NH41 348 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 GNRHR2Q96P88 292 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 SORCS2Q96PQ0 1159 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 SMOC1Q9H4F8 434 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 GPN3Q9UHW5 284 aaPredicted RBP10.71□□□□□ -0.69
USP1-201ENST00000339950 PRR14LQ5THK1 2151 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 A8MVM7 634 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 OMGP23515 440 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 ATG4DQ86TL0 474 aaPredicted RBP10.71□□□□□ -0.69
USP1-201ENST00000339950 PRR18Q8N4B5 295 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 EID2Q8N6I1 236 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 SUMF1Q8NBK3 374 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 SLC22A8Q8TCC7 542 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 FGF11Q92914 225 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 GABRG3Q99928 467 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 NICN1Q9BSH3 213 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 EHFQ9NZC4 300 aa10.71□□□□□ -0.69
USP1-201ENST00000339950 MRPS18BQ9Y676 258 aaKnown RBP10.71□□□□□ -0.69
USP1-201ENST00000339950 NAP1L6A6NFF2 107 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms