RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 MT-ND4P03905 459 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 ZNF806P0C7X5 589 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 ZNF17P17021 662 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 ACHEP22303 614 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 MMP16P51512 607 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 EFNB2P52799 333 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 B3GALT5-AS1P59052 145 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 RAC1P63000 192 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 KLF9Q13886 244 aaPredicted RBP13.87□□□□□ -0.19
CLN3-251ENST00000636853 PHYHD1Q5SRE7 291 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 KLHL24Q6TFL4 600 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 ZNF704Q6ZNC4 412 aaPredicted RBP13.87□□□□□ -0.19
CLN3-251ENST00000636853 ELMOD2Q8IZ81 293 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 OR2AJ1Q8NGZ0 328 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 OR14L1PQ8NHC6 308 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 CREB3L1Q96BA8 519 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 SRXN1Q9BYN0 137 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 TMEM9BQ9NQ34 198 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 DEPPQ9NTK1 212 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 CKLFQ9UBR5 152 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 TMA7Q9Y2S6 64 aaKnown RBP13.87□□□□□ -0.19
CLN3-251ENST00000636853 EIF1BO60739 113 aaKnown RBP13.87□□□□□ -0.19
CLN3-251ENST00000636853 WDPCPO95876 746 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 IGFBP3P17936 291 aaPredicted RBP13.87□□□□□ -0.19
CLN3-251ENST00000636853 GIFP27352 417 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 CYB561P49447 251 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 CD83Q01151 205 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 B3GNT2Q9NY97 397 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 GLTPQ9NZD2 209 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 KLK11Q9UBX7 282 aa13.87□□□□□ -0.19
CLN3-251ENST00000636853 KIAA1549Q9HCM3 1950 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 LRRC3CA6NJW4 275 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 NPIPA2E9PIF3 369 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 NPIPA3F8WFD2 350 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 SLC17A2O00624 439 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 RER1O15258 196 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 TLX3O43711 291 aaPredicted RBP13.86□□□□□ -0.19
CLN3-251ENST00000636853 TTRP02766 147 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 ACSM4P0C7M7 580 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 ARSBP15848 533 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 SRD5A2P31213 254 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 POU3F4P49335 361 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 CCR6P51684 374 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 TAS2R20P59543 309 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 CSNK2A1P68400 391 aaPredicted RBP13.86□□□□□ -0.19
CLN3-251ENST00000636853 SPOCK1Q08629 439 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 SPEM2Q0P670 501 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 RAB11BQ15907 218 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 C2orf76Q3KRA6 126 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 ESCO2Q56NI9 601 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 HES3Q5TGS1 186 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 TMEM244Q5VVB8 128 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 IDO2Q6ZQW0 420 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 OR9K2Q8NGE7 335 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 OR6N1Q8NGY5 312 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 ZNF775Q96BV0 537 aaPredicted RBP13.86□□□□□ -0.19
CLN3-251ENST00000636853 NAA11Q9BSU3 229 aaPredicted RBP13.86□□□□□ -0.19
CLN3-251ENST00000636853 PBOV1Q9GZY1 135 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 DPAGT1Q9H3H5 408 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 NUDT15Q9NV35 164 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 ING3Q9NXR8 418 aa13.86□□□□□ -0.19
CLN3-251ENST00000636853 CGGBP1Q9UFW8 167 aaPredicted RBP13.86□□□□□ -0.19
CLN3-251ENST00000636853 DCDC2BA2VCK2 349 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 PINLYPA6NC86 204 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 B8ZZF3 427 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 GABARAPH6UMI1 98 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 TRAPPC6AO75865 159 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 UBCP0CG48 685 aaKnown RBP13.85□□□□□ -0.19
CLN3-251ENST00000636853 CSNK1A1P48729 337 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 PRKXP51817 358 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 SNTB2Q13425 540 aaKnown RBP13.85□□□□□ -0.19
CLN3-251ENST00000636853 SPINK14Q6IE38 97 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 FCAMRQ8WWV6 532 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 DEDD2Q8WXF8 326 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 SNAPC3Q92966 411 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 FAM3DQ96BQ1 224 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 OR2M2Q96R28 347 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 CDC6Q99741 560 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 RABL2AQ9UBK7 228 aaPredicted RBP13.85□□□□□ -0.19
CLN3-251ENST00000636853 RABL2BQ9UNT1 228 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 RCE1Q9Y256 329 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 TTC28Q96AY4 2481 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 ZNF878C9JN71 531 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 KRT33AO76009 404 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 SLC2A1P11166 492 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 FSTP19883 344 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 HSD11B1P28845 292 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 GABREP78334 506 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 TAF13Q15543 124 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 SGCAQ16586 387 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 WIPI1Q5MNZ9 446 aaPredicted RBP13.85□□□□□ -0.19
CLN3-251ENST00000636853 BIVMQ86UB2 503 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 FGGYQ96C11 551 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 CACNG6Q9BXT2 260 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 PCNX2A6NKB5 2137 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 NCOA6Q14686 2063 aaPredicted RBP13.85□□□□□ -0.19
CLN3-251ENST00000636853 CELSR3Q9NYQ7 3312 aa13.85□□□□□ -0.19
CLN3-251ENST00000636853 ARPC4-TTLL3A0A0A6YYG9 625 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 TCRBP04435 133 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 CFPP27918 469 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms