RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ANOS1P23352 680 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 MPGP29372 298 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 MAGEB1P43366 347 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 ZMAT1Q5H9K5 638 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 ELFN2Q5R3F8 820 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 CEACAM19Q7Z692 300 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 NAXEQ8NCW5 288 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 OR6K3Q8NGY3 331 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 OR10AC1Q8NH08 325 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 TSC22D3Q99576 134 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 ATF6BQ99941 703 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 MED18Q9BUE0 208 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 KCNN2Q9H2S1 579 aa12.49□□□□□ -0.41
USP39-220ENST00000613444 TRBV5-5A0A0J9YX44 114 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 ZNF503-AS2A6NEH8 195 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 SYNGR3O43761 229 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 CGAP01215 116 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 ABOP16442 354 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 SDC2P34741 201 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 TIMP3P35625 211 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 PSMA6P60900 246 aaKnown RBP12.48□□□□□ -0.41
USP39-220ENST00000613444 PSG4Q00888 419 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 PCSK4Q6UW60 755 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 SLC16A14Q7RTX9 510 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 PRSS45Q7RTY3 260 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 BTLAQ7Z6A9 289 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 DOLPP1Q86YN1 238 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 CNEP1R1Q8N9A8 125 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 OR51A4Q8NGJ6 313 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 OR14A2Q96R54 314 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 WACQ9BTA9 647 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 BARHL1Q9BZE3 327 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 NIPAL2Q9H841 368 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 PLSCR4Q9NRQ2 329 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 OR52A1Q9UKL2 312 aa12.48□□□□□ -0.41
USP39-220ENST00000613444 LOC110117498-PIK3R3F6TDL0 507 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 PIN1P1O15428 100 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 GATBO75879 557 aaKnown RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 CDRT1O95170 752 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 SERPINA3P01011 423 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 IL1AP01583 271 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 HOXD4P09016 255 aaPredicted RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 CLEC2LP0C7M8 214 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 CRYGSP22914 178 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 GRB2P62993 217 aaKnown RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 SCRN3Q0VDG4 424 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 ZNF829Q3KNS6 432 aaPredicted RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 KRTAP27-1Q3LI81 207 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 GFRALQ6UXV0 394 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 C3P1Q6ZMU1 363 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 ABHD12BQ7Z5M8 362 aaPredicted RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 STARD4Q96DR4 205 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 KCNJ15Q99712 375 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 OR2H1Q9GZK4 316 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 WNT5BQ9H1J7 359 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 PLEK2Q9NYT0 353 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 CCDC59Q9P031 241 aaKnown RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 A0A096LPE4 126 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 A0A1W2PPZ6 126 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 OR6C6A6NF89 314 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 ZNF879B4DU55 563 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 SGCEO43556 437 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 FARS2O95363 451 aaKnown RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 CNOT4O95628 575 aaKnown RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 CRHP06850 196 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 UCHL1P09936 223 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 IGHV1-2P23083 117 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 CEACAM8P31997 349 aaPredicted RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 PRKXP51817 358 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 RAB35Q15286 201 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 ODF4Q2M2E3 257 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 ZNF774Q6NX45 483 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 ZNF676Q8N7Q3 588 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 OR1K1Q8NGR3 316 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 SLC7A6Q92536 515 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 BCL2L2Q92843 193 aaPredicted RBP12.47□□□□□ -0.41
USP39-220ENST00000613444 COMMD4Q9H0A8 199 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 TIMM10BQ9Y5J6 103 aa12.47□□□□□ -0.41
USP39-220ENST00000613444 POLEQ07864 2286 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 SLC19A2O60779 497 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 TTRP02766 147 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 ISG15P05161 165 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 CALRP27797 417 aaKnown RBP12.46□□□□□ -0.41
USP39-220ENST00000613444 HSD11B1P28845 292 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 SH3BGRP55822 239 aaPredicted RBP12.46□□□□□ -0.41
USP39-220ENST00000613444 ZNF121P58317 390 aaPredicted RBP12.46□□□□□ -0.41
USP39-220ENST00000613444 PCBD1P61457 104 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 TAF13Q15543 124 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 DGUOKQ16854 277 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 Q6ZT83 130 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 NR2C2APQ86WQ0 139 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 ELMOD2Q8IZ81 293 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 AKR7LQ8NHP1 331 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 DERL3Q96Q80 235 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 NXF2Q9GZY0 626 aaKnown RBP12.46□□□□□ -0.41
USP39-220ENST00000613444 PBOV1Q9GZY1 135 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 HDHD2Q9H0R4 259 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 TP63Q9H3D4 680 aaPredicted RBP12.46□□□□□ -0.41
USP39-220ENST00000613444 ZNF319Q9P2F9 582 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 NUFIP1Q9UHK0 495 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms