RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 STK11Q15831 433 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 PCK2Q16822 640 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 SCGB2B2Q4G0G5 96 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 CLVS2Q5SYC1 327 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 ZNF546Q86UE3 836 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 ACBD4Q8NC06 268 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 OR4S1Q8NGB4 309 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 OR5M8Q8NGP6 311 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 ST8SIA2Q92186 375 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 ZNF107Q9UII5 783 aaPredicted RBP17.21■□□□□ 0.35
VPS28-213ENST00000530983 IGKV1D-43A0A0B4J1Z2 117 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 TMEM269A0A1B0GVZ9 245 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 D6RAR5 112 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 SDC3O75056 442 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 PLATP00750 562 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 ZNF823P16415 610 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 TDGQ13569 410 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 PAPD4Q6PIY7 484 aaKnown RBP17.21■□□□□ 0.35
VPS28-213ENST00000530983 LANCL3Q6ZV70 420 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 BEST3Q8N1M1 668 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 ASB10Q8WXI3 467 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 PTX4Q96A99 478 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 SLC2A4RGQ9NR83 387 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 MKL2Q9ULH7 1088 aa17.21■□□□□ 0.35
VPS28-213ENST00000530983 RHPN2P1A8MT19 583 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 SMAD9O15198 467 aaKnown RBP17.2■□□□□ 0.34
VPS28-213ENST00000530983 HPP00738 406 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 RAB3AP20336 220 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 C14orf28Q4W4Y0 310 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 C1orf189Q5VU69 101 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 ARL5BQ96KC2 179 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 SLC6A15Q9H2J7 730 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 GDF2Q9UK05 429 aaPredicted RBP17.2■□□□□ 0.34
VPS28-213ENST00000530983 P2RY10O00398 339 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 NUDT21O43809 227 aaKnown RBP17.2■□□□□ 0.34
VPS28-213ENST00000530983 CD27P26842 260 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 OR1D5P58170 312 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 ZNF704Q6ZNC4 412 aaPredicted RBP17.2■□□□□ 0.34
VPS28-213ENST00000530983 SYT13Q7L8C5 426 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 NKAIN3Q8N8D7 197 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 RELL2Q8NC24 303 aaPredicted RBP17.2■□□□□ 0.34
VPS28-213ENST00000530983 ZNF248Q8NDW4 579 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 AQP3Q92482 292 aa17.2■□□□□ 0.34
VPS28-213ENST00000530983 EXPH5Q8NEV8 1989 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 UNC13CQ8NB66 2214 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 OR14I1A6ND48 311 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 OR5H14A6NHG9 310 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 A6NIZ1 184 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 LMO7DNF2Z398 122 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 CSN2P05814 226 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 FOLR1P15328 257 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 MGMTP16455 207 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 ARL4DP49703 201 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 FOXL2P58012 376 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 RAP1BP61224 184 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 RAP1AP62834 184 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 CFHR1Q03591 330 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 SRSF4Q08170 494 aaKnown RBP17.19■□□□□ 0.34
VPS28-213ENST00000530983 NKPD1Q17RQ9 610 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 OGFOD3Q6PK18 319 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 C5orf46Q6UWT4 87 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 C16orf47Q6ZP98 133 aaPredicted RBP17.19■□□□□ 0.34
VPS28-213ENST00000530983 ZNF584Q8IVC4 421 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 CLRN3Q8NCR9 226 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 NKD1Q969G9 470 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 KCNK17Q96T54 332 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 VSIG4Q9Y279 399 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 ZNF175Q9Y473 711 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 PHF3Q92576 2039 aaKnown RBP17.19■□□□□ 0.34
VPS28-213ENST00000530983 C2orf72A6NCS6 295 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 FAM74A7A6NL05 159 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 OR6C76A6NM76 312 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 RAB27BO00194 218 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 HLA-AP01891 365 aaKnown RBP17.19■□□□□ 0.34
VPS28-213ENST00000530983 CD34P28906 385 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 AGTR1P30556 359 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 ZNF260Q3ZCT1 412 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 FAM74A3Q4VXF1 159 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 TMEM244Q5VVB8 128 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 MRGPRFQ96AM1 343 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 WDR13Q9H1Z4 485 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 CNTD2Q9H8S5 307 aa17.19■□□□□ 0.34
VPS28-213ENST00000530983 NPIPA5E9PKD4 350 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 UBCP0CG48 685 aaKnown RBP17.18■□□□□ 0.34
VPS28-213ENST00000530983 LIPCP11150 499 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 RAB6AP20340 208 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 ZP4Q12836 540 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 OR7A5Q15622 319 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 ZNF813Q6ZN06 617 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 CD163Q86VB7 1156 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 PAQR4Q8N4S7 273 aaPredicted RBP17.18■□□□□ 0.34
VPS28-213ENST00000530983 TSTD1Q8NFU3 115 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 CMBLQ96DG6 245 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 MED29Q9NX70 200 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 SLC2A8Q9NY64 477 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 NPIPA1Q9UND3 350 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 UBBP0CG47 229 aa17.18■□□□□ 0.34
VPS28-213ENST00000530983 RPS27AP62979 156 aaKnown RBP17.18■□□□□ 0.34
VPS28-213ENST00000530983 UBA52P62987 128 aaKnown RBP17.18■□□□□ 0.34
VPS28-213ENST00000530983 FGL1Q08830 312 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms