RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 LHFPL6Q9Y693 200 aa17.26■□□□□ 0.35
COL6A1-203ENST00000466285 TRBV4-1A0A0J9YWV2 114 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 PRTN3P24158 256 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 FPR2P25090 351 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 PMELP40967 661 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 RSPO1Q2MKA7 263 aaPredicted RBP17.25■□□□□ 0.35
COL6A1-203ENST00000466285 TREML1Q86YW5 311 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 C1orf174Q8IYL3 243 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 BHLHE23Q8NDY6 225 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 LZICQ8WZA0 190 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 MEGF10Q96KG7 1140 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 NUAK2Q9H093 628 aa17.25■□□□□ 0.35
COL6A1-203ENST00000466285 NMNAT1Q9HAN9 279 aaPredicted RBP17.25■□□□□ 0.35
COL6A1-203ENST00000466285 VSX1Q9NZR4 365 aaPredicted RBP17.25■□□□□ 0.35
COL6A1-203ENST00000466285 HTR3EA5X5Y0 456 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 F5H5P2 479 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 XKRYO14609 159 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 PTP4A3O75365 173 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 MDH2P40926 338 aaKnown RBP17.24■□□□□ 0.35
COL6A1-203ENST00000466285 CDKN2AP42771 156 aaKnown RBP17.24■□□□□ 0.35
COL6A1-203ENST00000466285 GUCA1AP43080 201 aaPredicted RBP17.24■□□□□ 0.35
COL6A1-203ENST00000466285 OMPP47874 163 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 GUCY1A3Q02108 690 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 PRR31Q5SQ13 230 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 ZER1Q7Z7L7 766 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 RNF113BQ8IZP6 322 aaKnown RBP17.24■□□□□ 0.35
COL6A1-203ENST00000466285 C19orf18Q8NEA5 215 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 RSRC1Q96IZ7 334 aaKnown RBP17.24■□□□□ 0.35
COL6A1-203ENST00000466285 NTN4Q9HB63 628 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 NRIP3Q9NQ35 241 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 ENPP4Q9Y6X5 453 aa17.24■□□□□ 0.35
COL6A1-203ENST00000466285 TRAV40A0A0B4J280 105 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 KHDRBS3O75525 346 aaKnown RBP17.23■□□□□ 0.35
COL6A1-203ENST00000466285 HLA-DPB1P04440 258 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 WNT2P09544 360 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 COX4I1P13073 169 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 TNFRSF1AP19438 455 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 TNFSF4P23510 183 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 SDHAP31040 664 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 PAX8Q06710 450 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 BAMBIQ13145 260 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 SLC9A3R2Q15599 337 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 ANKDD1AQ495B1 522 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 ARL9Q6T311 187 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 MOGAT3Q86VF5 341 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 GLB1L2Q8IW92 636 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 PARP8Q8N3A8 854 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 ATG16L2Q8NAA4 619 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 GPX7Q96SL4 187 aaPredicted RBP17.23■□□□□ 0.35
COL6A1-203ENST00000466285 TMEM165Q9HC07 324 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 IER3IP1Q9Y5U9 82 aa17.23■□□□□ 0.35
COL6A1-203ENST00000466285 PRKDCP78527 4128 aaKnown RBP17.23■□□□□ 0.35
COL6A1-203ENST00000466285 IGLV1-36A0A0B4J1U3 117 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 NDUFB2O95178 105 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 PPP1R3DO95685 299 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 RAC2P15153 192 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 RPS2P15880 293 aaKnown RBP17.22■□□□□ 0.35
COL6A1-203ENST00000466285 HIST1H3AP68431 136 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 ESCO2Q56NI9 601 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 FGD3Q5JSP0 725 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 HIST2H3PS2Q5TEC6 136 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 LYPD2Q6UXB3 125 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 FBXW12Q6X9E4 464 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 CFAP77Q6ZQR2 320 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 HIST2H3AQ71DI3 136 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 FKBP9P1Q75LS8 142 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 KLBQ86Z14 1044 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 LINC00346Q8IVM7 164 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 OR8G5Q8NG78 346 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 TMEM246Q9BRR3 403 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 FUZQ9BT04 418 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 FN3KQ9H479 309 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 UNKLQ9H9P5 680 aaKnown RBP17.22■□□□□ 0.35
COL6A1-203ENST00000466285 NDUFAF4Q9P032 175 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 OR5V1Q9UGF6 321 aa17.22■□□□□ 0.35
COL6A1-203ENST00000466285 IGHV2-70DA0A0C4DH43 119 aa17.21■□□□□ 0.35
COL6A1-203ENST00000466285 C5orf63A6NC05 138 aa17.21■□□□□ 0.35
COL6A1-203ENST00000466285 RNASE1P07998 156 aaKnown RBP17.21■□□□□ 0.35
COL6A1-203ENST00000466285 PSKH1P11801 424 aa17.21■□□□□ 0.35
COL6A1-203ENST00000466285 IFNA8P32881 189 aa17.21■□□□□ 0.35
COL6A1-203ENST00000466285 LSM6P62312 80 aaKnown RBP17.21■□□□□ 0.35
COL6A1-203ENST00000466285 PTP4A1Q93096 173 aa17.21■□□□□ 0.35
COL6A1-203ENST00000466285 MRI1Q9BV20 369 aa17.21■□□□□ 0.35
COL6A1-203ENST00000466285 CDADC1Q9BWV3 514 aa17.21■□□□□ 0.35
COL6A1-203ENST00000466285 SSBP3Q9BWW4 388 aaPredicted RBP17.21■□□□□ 0.35
COL6A1-203ENST00000466285 LRCH1Q9Y2L9 728 aa17.21■□□□□ 0.35
COL6A1-203ENST00000466285 GSTA4O15217 222 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 PLATP00750 562 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 H1F0P07305 194 aaKnown RBP17.2■□□□□ 0.34
COL6A1-203ENST00000466285 MDKP21741 143 aaPredicted RBP17.2■□□□□ 0.34
COL6A1-203ENST00000466285 OMGP23515 440 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 FOXL1Q12952 345 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 KCNMB1Q16558 191 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 KRTAP27-1Q3LI81 207 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 PRAMEF6Q5VXH4 476 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 LEG1Q6P5S2 330 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 RBMS3Q6XE24 437 aaKnown RBP17.2■□□□□ 0.34
COL6A1-203ENST00000466285 BRD3OSQ6XYD6 125 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 ARPINQ7Z6K5 226 aa17.2■□□□□ 0.34
COL6A1-203ENST00000466285 NAA40Q86UY6 237 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms