RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 A0A0G2JND7 137 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 A0A1W2PPW3 197 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 A0A1W2PRG6 482 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 NPIPB13A6NJU9 1138 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 B4DSR2 109 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 NPIPB4C9JG80 1138 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 MCIDASD6RGH6 385 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 LYNX1G3V0Z9 82 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 BLOC1S5-TXNDC5H3BN57 136 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 FBP2O00757 339 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 OR5F1O95221 314 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 SNAP29O95721 258 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 NPPAP01160 153 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 QDPRP09417 244 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 TSPAN19P0C672 248 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 LYNX1P0DP58 116 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 THRBP10828 461 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 ZNF250P15622 560 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 FUT1P19526 365 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 TCN1P20061 433 aaPredicted RBP6.18□□□□□ -1.42
USP54-208ENST00000461520 COL8A2P25067 703 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 RAD52P43351 418 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 ALDH3B1P43353 468 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 GPR6P46095 362 aaPredicted RBP6.18□□□□□ -1.42
USP54-208ENST00000461520 ZNF84P51523 738 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 ZNF133P52736 654 aaPredicted RBP6.18□□□□□ -1.42
USP54-208ENST00000461520 CRYBA2P53672 197 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 RPL18Q07020 188 aaKnown RBP6.18□□□□□ -1.42
USP54-208ENST00000461520 TBC1D28Q2M2D7 210 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 MMEL1Q495T6 779 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 C10orf128Q5T292 105 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 TMEM53Q6P2H8 277 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 ERICH5Q6P6B1 374 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 SLC16A14Q7RTX9 510 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 LRP11Q86VZ4 500 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 CARM1Q86X55 608 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 CALHM3Q86XJ0 350 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 SLC30A7Q8NEW0 376 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 OR4K5Q8NGD3 323 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 OR8J3Q8NGG0 315 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 OR1J2Q8NGS2 313 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 ZNF519Q8TB69 540 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 LIPHQ8WWY8 451 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 MCHR2Q969V1 340 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 DAZAP1Q96EP5 407 aaKnown RBP6.18□□□□□ -1.42
USP54-208ENST00000461520 RITA1Q96K30 269 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 ZNF347Q96SE7 839 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 SEPHS2Q99611 448 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 SH3GL3Q99963 347 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 ECSITQ9BQ95 431 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 THAP7Q9BT49 309 aaPredicted RBP6.18□□□□□ -1.42
USP54-208ENST00000461520 LRMDAQ9H2I8 198 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 RNF121Q9H920 327 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 CDH20Q9HBT6 801 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 ARGLU1Q9NWB6 273 aaPredicted RBP6.18□□□□□ -1.42
USP54-208ENST00000461520 MYEF2Q9P2K5 600 aaKnown RBP6.18□□□□□ -1.42
USP54-208ENST00000461520 SH3GLB1Q9Y371 365 aa6.18□□□□□ -1.42
USP54-208ENST00000461520 A0A087WWL8 130 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 IQCMA0A1B0GVH7 501 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 HTR3EA5X5Y0 456 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 BBIP1A8MTZ0 92 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 C17orf100A8MU93 164 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 TCF21O43680 179 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 TRMUO75648 421 aaKnown RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 OR7A10O76100 309 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 IFNA14P01570 189 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 TFP02787 698 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 MMP7P09237 267 aaPredicted RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 SAGP10523 405 aaPredicted RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 NR2C1P13056 603 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 CCL2P13500 99 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 ACADSP16219 412 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 SRP14P37108 136 aaKnown RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 DAP3P51398 398 aaKnown RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 ARFIP2P53365 341 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 UGT2B15P54855 530 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 UCP2P55851 309 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 KLF3P57682 345 aaPredicted RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 TAS2R41P59536 307 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 MRPS34P82930 218 aaKnown RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 RUNX1T1Q06455 604 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 PIN1Q13526 163 aaPredicted RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 CCNIQ14094 377 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 MAD2L1BPQ15013 274 aaPredicted RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 MAPRE2Q15555 327 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 MOGQ16653 247 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 PCGF3Q3KNV8 242 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 TMEM154Q6P9G4 183 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 DEF8Q6ZN54 512 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 NKAIN4Q8IVV8 208 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 IZUMO1Q8IYV9 350 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 PAQR4Q8N4S7 273 aaPredicted RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 RBM15BQ8NDT2 890 aaKnown RBP6.17□□□□□ -1.42
USP54-208ENST00000461520 NOXO1Q8NFA2 376 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 PFN4Q8NHR9 129 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 CLDND2Q8NHS1 167 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 SYNPRQ8TBG9 265 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 TMEM255BQ8WV15 326 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 TMEM239Q8WW34 195 aa6.17□□□□□ -1.42
USP54-208ENST00000461520 C11orf40Q8WZ69 217 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms