RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 FDX2Q6P4F2 183 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 ANGPTL5Q86XS5 388 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 ASB17Q8WXJ9 295 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 OR8D1Q8WZ84 308 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 PMM1Q92871 262 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 TMEM230Q96A57 120 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 RSPRY1Q96DX4 576 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 MALSU1Q96EH3 234 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 C14orf144Q96I85 54 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 HHIPL1Q96JK4 782 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 SERINC2Q96SA4 455 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 GAS2L1Q99501 681 aaPredicted RBP6.09□□□□□ -1.43
VPS39-202ENST00000348544 IER2Q9BTL4 223 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 RAB11FIP5Q9BXF6 653 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 TOLLIPQ9H0E2 274 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 CHRDQ9H2X0 955 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 TUBA4BQ9H853 241 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 POLE3Q9NRF9 147 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 GTF2A1LQ9UNN4 478 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 HIF3AQ9Y2N7 669 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 KPTNQ9Y664 436 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 TRPM6Q9BX84 2022 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 TBC1D3IA0A087WXS9 549 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 A0A1W2PPE2 198 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 MANSC4A6NHS7 340 aaPredicted RBP6.09□□□□□ -1.44
VPS39-202ENST00000348544 B3GALT2O43825 422 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 LMX1BO60663 402 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 CTSVO60911 334 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 FGF19O95750 216 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 CSTBP04080 98 aaKnown RBP6.09□□□□□ -1.44
VPS39-202ENST00000348544 ITGA3P26006 1051 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 RAB2AP61019 212 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 DEFA6Q01524 100 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 SPOCK1Q08629 439 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 RAB32Q13637 225 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 SLC17A1Q14916 467 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 EBPQ15125 230 aaKnown RBP6.09□□□□□ -1.44
VPS39-202ENST00000348544 ZNF74Q16587 644 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 HNRNPA1L2Q32P51 320 aaKnown RBP6.09□□□□□ -1.44
VPS39-202ENST00000348544 KLHL26Q53HC5 615 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 ALG10Q5BKT4 473 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 PHF19Q5T6S3 580 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 TMEM268Q5VZI3 342 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 Q6ZRG5 221 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 DEFB128Q7Z7B8 93 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 CACUL1Q86Y37 369 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 ARRDC1Q8N5I2 433 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 CSNK1A1LQ8N752 337 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 ZNF383Q8NA42 475 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 OR52R1Q8NGF1 315 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 OR4D6Q8NGJ1 314 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 OTOSQ8NHW6 89 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 NT5CQ8TCD5 201 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 SLC25A43Q8WUT9 341 aaPredicted RBP6.09□□□□□ -1.44
VPS39-202ENST00000348544 HOXB13Q92826 284 aaPredicted RBP6.09□□□□□ -1.44
VPS39-202ENST00000348544 CTHRC1Q96CG8 243 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 OR10C1Q96KK4 312 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 LRRC3BQ96PB8 259 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 TSPAN32Q96QS1 320 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 OR8B4Q96RC9 309 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 INTS14Q96SY0 518 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 ELF4Q99607 663 aaPredicted RBP6.09□□□□□ -1.44
VPS39-202ENST00000348544 PARP12Q9H0J9 701 aaKnown RBP6.09□□□□□ -1.44
VPS39-202ENST00000348544 PRDM13Q9H4Q3 707 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 TAF9BQ9HBM6 251 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 PARP11Q9NR21 331 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 DHDHQ9UQ10 334 aa6.09□□□□□ -1.44
VPS39-202ENST00000348544 COL4A2P08572 1712 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 NOTCH4Q99466 2003 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 PRR19A6NJB7 356 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 M0R036 132 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 TLX1P31314 330 aaPredicted RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 SULT1A1P50225 295 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 SQSTM1Q13501 440 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 GPR18Q14330 331 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 DHCR24Q15392 516 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 SLC9A3R2Q15599 337 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ZNF124Q15973 351 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 TEX30Q5JUR7 227 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 EEF1A1P5Q5VTE0 462 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 LILRA6Q6PI73 481 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 UNQ6494/PRO21346Q6UXR6 183 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ZNF550Q7Z398 422 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 MDGA2Q7Z553 956 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 HOGA1Q86XE5 327 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 LYPD6Q86Y78 171 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 JAGN1Q8N5M9 183 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 FRMD1Q8N878 549 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 AKR7LQ8NHP1 331 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 LYPD6BQ8NI32 183 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ZNF524Q96C55 264 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 TM4SF19Q96DZ7 209 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 YPEL4Q96NS1 127 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 OR2A5Q96R48 311 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 LPAR4Q99677 370 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 CDC6Q99741 560 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 KXD1Q9BQD3 176 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 RAB33BQ9H082 229 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 GDF2Q9UK05 429 aaPredicted RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 PILRAQ9UKJ1 303 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms