RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SLC7A6Q92536 515 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 WNT2BQ93097 391 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 ORAI1Q96D31 301 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 MYCBPQ99417 103 aaPredicted RBP17.65■□□□□ 0.42
CLN3-250ENST00000636839 TUBD1Q9UJT1 453 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 OR4C45A6NMZ5 311 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 HLA-DPB1P04440 258 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 RPS19P39019 145 aaKnown RBP17.64■□□□□ 0.41
CLN3-250ENST00000636839 KIR2DL2P43627 348 aaPredicted RBP17.64■□□□□ 0.41
CLN3-250ENST00000636839 MXD1Q05195 221 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 NSUN5P2Q63ZY6 315 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 VWA1Q6PCB0 445 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 ZNF813Q6ZN06 617 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 ZNF587BE7ETH6 402 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 RGS9O75916 674 aaPredicted RBP17.64■□□□□ 0.41
CLN3-250ENST00000636839 CAPZA2P47755 286 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 CCDC92Q53HC0 331 aaPredicted RBP17.64■□□□□ 0.41
CLN3-250ENST00000636839 FAM214BQ7L5A3 538 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 CEACAM19Q7Z692 300 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.64■□□□□ 0.41
CLN3-250ENST00000636839 C4orf45Q96LM5 186 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 SLX1AQ9BQ83 275 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 TPK1Q9H3S4 243 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 GALNT8Q9NY28 637 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 N6AMT1Q9Y5N5 214 aa17.64■□□□□ 0.41
CLN3-250ENST00000636839 RP1L1Q8IWN7 2480 aaPredicted RBP17.64■□□□□ 0.41
CLN3-250ENST00000636839 NPR2P20594 1047 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 PRKXP51817 358 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 LY6DQ14210 128 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 ACSM3Q53FZ2 586 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 GDPGP1Q6ZNW5 385 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 USP43Q70EL4 1123 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 NAA40Q86UY6 237 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 ALDH16A1Q8IZ83 802 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 KDF1Q8NAX2 398 aaPredicted RBP17.63■□□□□ 0.41
CLN3-250ENST00000636839 IL17RDQ8NFM7 739 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 OR51A4Q8NGJ6 313 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 OR14A2Q96R54 314 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 GP6Q9HCN6 339 aa17.63■□□□□ 0.41
CLN3-250ENST00000636839 ARHGAP21Q5T5U3 1957 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 TMEM269A0A1B0GVZ9 245 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 RPL36A-HNRNPH2H7BZ11 118 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 SC5DO75845 299 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 SLC2A1P11166 492 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 FGF9P31371 208 aaPredicted RBP17.62■□□□□ 0.41
CLN3-250ENST00000636839 SDC2P34741 201 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 OR3A2P47893 321 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 GALK2Q01415 458 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 RSPO1Q2MKA7 263 aaPredicted RBP17.62■□□□□ 0.41
CLN3-250ENST00000636839 NAXEQ8NCW5 288 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 OR5AK2Q8NH90 309 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 FAM57AQ8TBR7 257 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 TSC22D3Q99576 134 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 G6PC2Q9NQR9 355 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 ZNF224Q9NZL3 707 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 C5orf63A6NC05 138 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 ZNF503-AS2A6NEH8 195 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 CDRT1O95170 752 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 DBHP09172 617 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 ZNF32P17041 273 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 UGT2B10P36537 528 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 CAV3P56539 151 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 HIST1H3AP68431 136 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 HIST2H3PS2Q5TEC6 136 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 FBXW9Q5XUX1 488 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 ZNF774Q6NX45 483 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 TFAP2EQ6VUC0 442 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 HIST2H3AQ71DI3 136 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 CATSPERDQ86XM0 798 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 AKR7LQ8NHP1 331 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 SLC25A18Q9H1K4 315 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 SNTG1Q9NSN8 517 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 ZNF281Q9Y2X9 895 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 R4GMQ9 66 aa17.62■□□□□ 0.41
CLN3-250ENST00000636839 PKD1L2Q7Z442 2459 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 SPTA1P02549 2419 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 ZNF878C9JN71 531 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 IL18BPO95998 194 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 ITGA5P08648 1049 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 TAF13Q15543 124 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 FDX2Q6P4F2 183 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 DEGS2Q6QHC5 323 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 GJC3Q8NFK1 279 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 KCTD7Q96MP8 289 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 GLRX2Q9NS18 164 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 FAM206AQ9NX38 181 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 ZGRF1Q86YA3 2104 aa17.61■□□□□ 0.41
CLN3-250ENST00000636839 ANKRD61A6NGH8 418 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 ACOD1A6NK06 481 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 ZNF254O75437 659 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 TNFSF13O75888 250 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 NCR1O76036 304 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 CST2P09228 141 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 CD53P19397 219 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 CALRP27797 417 aaKnown RBP17.6■□□□□ 0.41
CLN3-250ENST00000636839 TUBA1BP68363 451 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 GFRALQ6UXV0 394 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 TUBA1AQ71U36 451 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 SLC16A14Q7RTX9 510 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 BTLAQ7Z6A9 289 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms