RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 FOXN4Q96NZ1 517 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 EGLN1Q9GZT9 426 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 SEC61A2Q9H9S3 476 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 FGF22Q9HCT0 170 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 SMCO4Q9NRQ5 59 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 NOSIPQ9Y314 301 aaKnown RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 A0A1W2PP55 124 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 WIPF3A6NGB9 483 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 H0YIZ8 118 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 PAX6P26367 422 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 CTNNB1P35222 781 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 F2RL1P55085 397 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 MFGE8Q08431 387 aaPredicted RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 EIF2B1Q14232 305 aaKnown RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 ELAVL1Q15717 326 aaKnown RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 EIF2S3LQ2VIR3 472 aaKnown RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 EMC4Q5J8M3 183 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 TMEM184AQ6ZMB5 413 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 ATG4DQ86TL0 474 aaPredicted RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 FANCMQ8IYD8 2048 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 C15orf54Q8N8G6 183 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 GATSQ8NAP1 163 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 PHOSPHO1Q8TCT1 267 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 RNF128Q8TEB7 428 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 AQP3Q92482 292 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 NKD1Q969G9 470 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 RERGQ96A58 199 aaPredicted RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 C14orf79Q96F83 325 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 ZC3H10Q96K80 434 aaKnown RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 CLCC1Q96S66 551 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 NMES1Q9C002 83 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 SEBOXQ9HB31 216 aaPredicted RBP12.68□□□□□ -0.38
LDB3-209ENST00000623056 DPP7Q9UHL4 492 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 PCDHGA1Q9Y5H4 931 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 C5orf42Q9H799 3197 aa12.68□□□□□ -0.38
LDB3-209ENST00000623056 COL4A2P08572 1712 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 MSGN1A6NI15 193 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 RNASEK-C17orf49H0YIS7 233 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 TO15178 435 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 S100A6P06703 90 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 CD2P06729 351 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 CD37P11049 281 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 ZNF44P15621 663 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 IGFALSP35858 605 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 WASP42768 502 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 PPT1P50897 306 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 SPOCK1Q08629 439 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 SGCGQ13326 291 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 KIR2DS3Q14952 304 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 CST6Q15828 149 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 TEX30Q5JUR7 227 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 ZNF585AQ6P3V2 769 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 ETV3LQ6ZN32 361 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 ZNF679Q8IYX0 411 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 JAGN1Q8N5M9 183 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 OR10G6Q8NH81 332 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 SLC25A44Q96H78 314 aaPredicted RBP12.67□□□□□ -0.38
LDB3-209ENST00000623056 ELF4Q99607 663 aaPredicted RBP12.67□□□□□ -0.38
LDB3-209ENST00000623056 MICU1Q9BPX6 476 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 ZFYVE21Q9BQ24 234 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 SLC17A9Q9BYT1 436 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 FN3KRPQ9HA64 309 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 GDE1Q9NZC3 331 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 MRPS33Q9Y291 106 aaKnown RBP12.67□□□□□ -0.38
LDB3-209ENST00000623056 USP34Q70CQ2 3546 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 HLA-DQA2P01906 255 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 PNMTP11086 282 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 FSTP19883 344 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 MAOAP21397 527 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 HRH1P35367 487 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 EGR4Q05215 589 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 SRSF5Q13243 272 aaKnown RBP12.67□□□□□ -0.38
LDB3-209ENST00000623056 AKIRIN2Q53H80 203 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 KLHL26Q53HC5 615 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 TMEM240Q5SV17 173 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 ZNF600Q6ZNG1 722 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 NUBPLQ8TB37 319 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 ADAMTS17Q8TE56 1095 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 ROBO4Q8WZ75 1007 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 HIST1H2BAQ96A08 127 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 CMBLQ96DG6 245 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 FBXO17Q96EF6 278 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 SAT2Q96F10 170 aaPredicted RBP12.67□□□□□ -0.38
LDB3-209ENST00000623056 SMIM8Q96KF7 97 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 G6PC3Q9BUM1 346 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 OR51M1Q9H341 326 aa12.67□□□□□ -0.38
LDB3-209ENST00000623056 MRPS23Q9Y3D9 190 aaKnown RBP12.67□□□□□ -0.38
LDB3-209ENST00000623056 NUDT21O43809 227 aaKnown RBP12.66□□□□□ -0.38
LDB3-209ENST00000623056 SLC6A9P48067 706 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 CX3CR1P49238 355 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 ZNF260Q3ZCT1 412 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 WBP2NLQ6ICG8 309 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 FAM3CQ92520 227 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 APOOQ9BUR5 198 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 LAT2Q9GZY6 243 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 Q9N2J8 555 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 OR2S2Q9NQN1 319 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 STARD5Q9NSY2 213 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 MIOXQ9UGB7 285 aa12.66□□□□□ -0.38
LDB3-209ENST00000623056 DNAH14Q0VDD8 3507 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms