RNA–Protein interactions for RNA: ENST00000580222.5

LIMD2-209, Transcript of LIM domain containing 2, humanhuman

TSL 3

Gene LIMD2, Length 846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-209ENST00000580222 ZNF84P51523 738 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 EFNB3Q15768 340 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 HIST3H3Q16695 136 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 HIKESHIQ53FT3 197 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 THEM4Q5T1C6 240 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 SLX4IPQ5VYV7 408 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 ZNF786Q8N393 782 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 SLC38A2Q96QD8 506 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 TOR3AQ9H497 397 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 RERGLQ9H628 205 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 SEC61A2Q9H9S3 476 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 CMC2Q9NRP2 79 aa16.62■□□□□ 0.25
LIMD2-209ENST00000580222 SMPD3Q9NY59 655 aaPredicted RBP16.62■□□□□ 0.25
LIMD2-209ENST00000580222 VSX1Q9NZR4 365 aaPredicted RBP16.62■□□□□ 0.25
LIMD2-209ENST00000580222 HEATR1Q9H583 2144 aaKnown RBP16.61■□□□□ 0.25
LIMD2-209ENST00000580222 B4DSR2 109 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 WNT9BO14905 357 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 SNAP29O95721 258 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 EPHA2P29317 976 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 POLR2IP36954 125 aaKnown RBP16.61■□□□□ 0.25
LIMD2-209ENST00000580222 SH3BGRP55822 239 aaPredicted RBP16.61■□□□□ 0.25
LIMD2-209ENST00000580222 TGFBR3Q03167 851 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 CRMP1Q14194 572 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 DNM1P34Q6PK57 102 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 USP43Q70EL4 1123 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 GLCCI1Q86VQ1 547 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 C17orf78Q8N4C9 275 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 CYB561A3Q8NBI2 242 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 SLC37A3Q8NCC5 494 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 NSMAFQ92636 917 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 ZNF837Q96EG3 531 aaPredicted RBP16.61■□□□□ 0.25
LIMD2-209ENST00000580222 RDH12Q96NR8 316 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 MBOAT4Q96T53 435 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 DOK1Q99704 481 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 RAB1BQ9H0U4 201 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 VCX3BQ9H321 246 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 FN3KQ9H479 309 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 RPRD1BQ9NQG5 326 aaKnown RBP16.61■□□□□ 0.25
LIMD2-209ENST00000580222 TVP23BQ9NYZ1 205 aa16.61■□□□□ 0.25
LIMD2-209ENST00000580222 IGKV1D-43A0A0B4J1Z2 117 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 TMEM129A0AVI4 362 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 ZNF99A8MXY4 864 aaPredicted RBP16.6■□□□□ 0.25
LIMD2-209ENST00000580222 SURF4O15260 269 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 SLC16A7O60669 478 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 SEC14L2O76054 403 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 SNAPC1Q16533 368 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 C10orf128Q5T292 105 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 LRFN4Q6PJG9 635 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 SLC25A47Q6Q0C1 308 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 TREML4Q6UXN2 200 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 NPEPL1Q8NDH3 523 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 C1orf162Q8NEQ5 155 aaPredicted RBP16.6■□□□□ 0.25
LIMD2-209ENST00000580222 NRG4Q8WWG1 115 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 TMEM186Q96B77 213 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 NMD3Q96D46 503 aaKnown RBP16.6■□□□□ 0.25
LIMD2-209ENST00000580222 FOXB1Q99853 325 aa16.6■□□□□ 0.25
LIMD2-209ENST00000580222 A0A1W2PPL8 197 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 CTLA4P16410 223 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 EPHA1P21709 976 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 PAICSP22234 425 aaKnown RBP16.59■□□□□ 0.25
LIMD2-209ENST00000580222 CRABP1P29762 137 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 CALCRP30988 508 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 ZNF133P52736 654 aaPredicted RBP16.59■□□□□ 0.25
LIMD2-209ENST00000580222 ARF1P84077 181 aaKnown RBP16.59■□□□□ 0.25
LIMD2-209ENST00000580222 HGFACQ04756 655 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 C12orf73Q69YU5 71 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 ZDHHC22Q8N966 263 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 ZNF555Q8NEP9 628 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 OR1K1Q8NGR3 316 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 UBASH3BQ8TF42 649 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 OTULINQ96BN8 352 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 TSSK2Q96PF2 358 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 NUAK2Q9H093 628 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 NARFLQ9H6Q4 476 aa16.59■□□□□ 0.25
LIMD2-209ENST00000580222 OR6C68A6NDL8 312 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 M0R129 80 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 KHDRBS3O75525 346 aaKnown RBP16.58■□□□□ 0.24
LIMD2-209ENST00000580222 B4GALT1P15291 398 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 PCMT1P22061 227 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 CDC42P60953 191 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 ZNF362Q5T0B9 420 aaPredicted RBP16.58■□□□□ 0.24
LIMD2-209ENST00000580222 SHISA2Q6UWI4 295 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 ZNF813Q6ZN06 617 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 OR9Q1Q8NGQ5 310 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 CLDND2Q8NHS1 167 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 FAM81AQ8TBF8 368 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 NEU4Q8WWR8 484 aaPredicted RBP16.58■□□□□ 0.24
LIMD2-209ENST00000580222 SRA1Q9HD15 236 aaKnown RBP16.58■□□□□ 0.24
LIMD2-209ENST00000580222 GMPPBQ9Y5P6 360 aa16.58■□□□□ 0.24
LIMD2-209ENST00000580222 LOC105371242A0A075B767 164 aa16.57■□□□□ 0.24
LIMD2-209ENST00000580222 FAM183AA6NL82 134 aa16.57■□□□□ 0.24
LIMD2-209ENST00000580222 PRR23D1E9PI22 279 aaPredicted RBP16.57■□□□□ 0.24
LIMD2-209ENST00000580222 PRR23D2P0DMB1 279 aaPredicted RBP16.57■□□□□ 0.24
LIMD2-209ENST00000580222 THBS4P35443 961 aa16.57■□□□□ 0.24
LIMD2-209ENST00000580222 GGT2P36268 569 aa16.57■□□□□ 0.24
LIMD2-209ENST00000580222 PTDSS1P48651 473 aaKnown RBP16.57■□□□□ 0.24
LIMD2-209ENST00000580222 CENPAP49450 140 aa16.57■□□□□ 0.24
LIMD2-209ENST00000580222 HIST2H2BDQ6DRA6 164 aa16.57■□□□□ 0.24
LIMD2-209ENST00000580222 ANKRD16Q6P6B7 361 aa16.57■□□□□ 0.24
LIMD2-209ENST00000580222 KLHL24Q6TFL4 600 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms