RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	NOS3	P29474	1203 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	OMP	P47874	163 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	LMO4	P61968	165 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	LCN6	P62502	163 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	TNFAIP6	P98066	277 aa	Predicted RBP	11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	SPIB	Q01892	262 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	MVK	Q03426	396 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	ECH1	Q13011	328 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	VASH1	Q7L8A9	365 aa	Predicted RBP	11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	SPIC	Q8N5J4	248 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	CLDN22	Q8N7P3	220 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	GJC3	Q8NFK1	279 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	CCL17	Q92583	94 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	C7orf34	Q96L11	122 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	C19orf24	Q9BVV8	132 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	RERGL	Q9H628	205 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	EMC7	Q9NPA0	242 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	ASH2L	Q9UBL3	628 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	TAGLN3	Q9UI15	199 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	WIPI2	Q9Y4P8	454 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	FBN3	Q75N90	2809 aa		11.98	□□□□□ -0.49
TPM1-223	ENST00000560445	ISPD	A4D126	451 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	SOCS2	O14508	198 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	ARPC3	O15145	178 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	PTP4A3	O75365	173 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	KRT36	O76013	467 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	MPZL1	O95297	269 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	RAC2	P15153	192 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	CTLA4	P16410	223 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	KITLG	P21583	273 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	MPV17	P39210	176 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	KCNMB1	Q16558	191 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	MEX3D	Q86XN8	651 aa	Known RBP	11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	RNF148	Q8N7C7	305 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	OR52L1	Q8NGH7	329 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	OR1F12	Q8NHA8	337 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	PTP4A1	Q93096	173 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	APOBEC3D	Q96AK3	386 aa	Predicted RBP	11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	SAMD8	Q96LT4	415 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	CDRT15	Q96T59	188 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	OCEL1	Q9H607	264 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	LPAR2	Q9HBW0	351 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	KCNG2	Q9UJ96	466 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	PCDHB10	Q9UN67	800 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	NOP16	Q9Y3C1	178 aa	Known RBP	11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	IER3IP1	Q9Y5U9	82 aa		11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	ANK3	Q12955	4377 aa	Known RBP	11.97	□□□□□ -0.49
TPM1-223	ENST00000560445	TRBV4-1	A0A0J9YWV2	114 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	ZSCAN5B	A6NJL1	495 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	FAM157A	C9JC47	383 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	OR10H3	O60404	316 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	FOXH1	O75593	365 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	IGHV2-5	P01817	119 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	SELE	P16581	610 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	CENPA	P49450	140 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	GYS2	P54840	703 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	CDK5R2	Q13319	367 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	KRTAP24-1	Q3LI83	254 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	AVPI1	Q5T686	147 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	DCAF12L2	Q5VW00	463 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	FAHD2B	Q6P2I3	314 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	PIGW	Q7Z7B1	504 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	ARHGAP24	Q8N264	748 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	KLHL36	Q8N4N3	616 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	OR2AJ1	Q8NGZ0	328 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	OR52J3	Q8NH60	311 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	FAHD2A	Q96GK7	314 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	ERMAP	Q96PL5	475 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	COQ7	Q99807	217 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	CDADC1	Q9BWV3	514 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	HCAR1	Q9BXC0	346 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	MUC13	Q9H3R2	512 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	METTL17	Q9H7H0	456 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	IL19	Q9UHD0	177 aa		11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	PURG	Q9UJV8	347 aa	Known RBP	11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	COA3	Q9Y2R0	106 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM1-223	ENST00000560445	PPIAL4E	A0A075B759	164 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	PPIAL4C	A0A0B4J2A2	164 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	LRRC30	A6NM36	301 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	PPIAL4D	F5H284	164 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	UBOX5	O94941	541 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	NGF	P01138	241 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	PPIAL4F	P0DN26	164 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	RRM2	P31350	389 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	PSG7	Q13046	419 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	RFX4	Q33E94	735 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	MUC20	Q8N307	709 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	OR2Z1	Q8NG97	314 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	OR4C15	Q8NGM1	316 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	GNPDA2	Q8TDQ7	276 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	HAVCR1	Q96D42	359 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	ZNF582	Q96NG8	517 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	IFT27	Q9BW83	186 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	NUAK2	Q9H093	628 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	OR52D1	Q9H346	318 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	IL1RAP	Q9NPH3	570 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	KLHL21	Q9UJP4	597 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	PPP1R3C	Q9UQK1	317 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	NPTN	Q9Y639	398 aa		11.95	□□□□□ -0.5
TPM1-223	ENST00000560445	TANC2	Q9HCD6	1990 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms