RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 GHITMQ9H3K2 345 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 UBQLN4Q9NRR5 601 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 PLEKHJ1Q9NW61 149 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 TBC1D29Q9UFV1 150 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 FBXO7Q9Y3I1 522 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 GLSO94925 669 aaPredicted RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 IL5P05113 134 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 TMEM225BP0DP42 221 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 AVPR2P30518 371 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 HOXC12P31275 282 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 CSF2RBP32927 897 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 POU3F1Q03052 451 aaPredicted RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 DPTQ07507 201 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 RAB31Q13636 194 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 C4orf17Q53FE4 359 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 KIRREL2Q6UWL6 708 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SULF2Q8IWU5 870 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 RNF128Q8TEB7 428 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 EXOSC3Q9NQT5 275 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 OSGIN2Q9Y236 505 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 TRIP12Q14669 1992 aaPredicted RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 OR2W5A6NFC9 320 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 F5H5K5 113 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 H0Y8X5 98 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 GPR31O00270 319 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 UTS2O95399 124 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 HBE1P02100 147 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 MT-ND4LP03901 98 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 USF1P22415 310 aaPredicted RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 TSFMP43897 325 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 ATP1B3P54709 279 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 ACSM1Q08AH1 577 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 Q6ZSR6 202 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 CBLN2Q8IUK8 224 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 DDIT4LQ96D03 193 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 SLC25A31Q9H0C2 315 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 BANF2Q9H503 90 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 BCO1Q9HAY6 547 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 DUSP22Q9NRW4 184 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 GPR160Q9UJ42 338 aa6.47□□□□□ -1.37
USP3-210ENST00000559192 PDCD11Q14690 1871 aaKnown RBP6.47□□□□□ -1.37
USP3-210ENST00000559192 AQP7O14520 342 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 NXPH3O95157 252 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 ZFPL1O95159 310 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 TMIGD3P0DMS9 266 aaPredicted RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 CD80P33681 288 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 HRH1P35367 487 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 DMKNQ6E0U4 476 aaPredicted RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 OR52W1Q6IF63 320 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 C11orf87Q6NUJ2 197 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 SLC16A13Q7RTY0 426 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 DCXRQ7Z4W1 244 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 UBE3DQ7Z6J8 389 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 ZNF611Q8N823 705 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 ZSCAN4Q8NAM6 433 aaPredicted RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 OR8U1Q8NH10 309 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 LINC00615Q96LM1 132 aaPredicted RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 DCBLD2Q96PD2 775 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 FAM103A1Q9BTL3 118 aaKnown RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 ZNF442Q9H7R0 627 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 ZNF586Q9NXT0 402 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 PCDHB10Q9UN67 800 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 COA3Q9Y2R0 106 aaPredicted RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 SF3B6Q9Y3B4 125 aaKnown RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 ENTPD2Q9Y5L3 495 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 ZNF638Q14966 1978 aaKnown RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 SHISA3A0PJX4 238 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 TMEM200CA6NKL6 621 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 GSTZ1O43708 216 aaPredicted RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 CALCRP30988 508 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 SLC6A8P48029 635 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 ELOCQ15369 112 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 EEF1A1P5Q5VTE0 462 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 FAM69BQ5VUD6 431 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 FAM57BQ71RH2 274 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 MDGA2Q7Z553 956 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 KLHDC1Q8N7A1 406 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 BCORP1Q8N888 145 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 UBAC2Q8NBM4 344 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 CCL4L1Q8NHW4 92 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 ZNF296Q8WUU4 475 aaPredicted RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 DAZAP1Q96EP5 407 aaKnown RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 NPAS1Q99742 590 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 FKRPQ9H9S5 495 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 OR52A1Q9UKL2 312 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 MRPS28Q9Y2Q9 187 aaKnown RBP6.46□□□□□ -1.37
USP3-210ENST00000559192 ARL2-SNX15V9GYD0 113 aa6.46□□□□□ -1.37
USP3-210ENST00000559192 RALGAPA2Q2PPJ7 1873 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 A0A087WV62 115 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 C7orf66A4D0T2 115 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 SEC14L6B5MCN3 397 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 ZNF25P17030 456 aaPredicted RBP6.46□□□□□ -1.38
USP3-210ENST00000559192 LAP3P28838 519 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 DAP3P51398 398 aaKnown RBP6.46□□□□□ -1.38
USP3-210ENST00000559192 RAG2P55895 527 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 B3GNTL1Q67FW5 361 aaPredicted RBP6.46□□□□□ -1.38
USP3-210ENST00000559192 OR14A16Q8NHC5 309 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 HSD17B8Q92506 261 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 FAM3CQ92520 227 aa6.46□□□□□ -1.38
USP3-210ENST00000559192 DYRK2Q92630 601 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms