RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SLC22A31A6NKX4 558 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 E9PQ18 207 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 PRODHO43272 600 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 UPK3AO75631 287 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF432O94892 652 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 GYPBP06028 91 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 SPI1P17947 270 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 PYCR1P32322 319 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 OR3A2P47893 321 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 BLVRAP53004 296 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 SLC25A1P53007 311 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 ISL1P61371 349 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 PPA1Q15181 289 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 OCLNQ16625 522 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 SLC35D3Q5M8T2 416 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 NHLRC1Q6VVB1 395 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 BCDIN3DQ7Z5W3 292 aaKnown RBP10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 TMEM123Q8N131 208 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 BPIFB6Q8NFQ5 453 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 OR51L1Q8NGJ5 315 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 RHOXF1Q8NHV9 184 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 TMEM54Q969K7 222 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 MCHR2Q969V1 340 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF582Q96NG8 517 aaPredicted RBP10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 FOXN4Q96NZ1 517 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 TSSK2Q96PF2 358 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 MRPL13Q9BYD1 178 aaKnown RBP10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 LINC00470Q9BZP3 86 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF696Q9H7X3 374 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 SEC61A2Q9H9S3 476 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 BLOC1S6Q9UL45 172 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 B9D1Q9UPM9 204 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 MOKQ9UQ07 419 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 POLR1DQ9Y2S0 133 aa10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 RPL36Q9Y3U8 105 aaKnown RBP10.81□□□□□ -0.68
CLSTN3-208ENST00000538933 FAM157AC9JC47 383 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 NDUFS8O00217 210 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 DHHO43323 396 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 ENTPD6O75354 484 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 GLCEO94923 617 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 CLUP10909 449 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 CTLA4P16410 223 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 CSNK2BP67870 215 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 ROR2Q01974 943 aaKnown RBP10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 TEKQ02763 1124 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 GLO1Q04760 184 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 SPOCK1Q08629 439 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 CDK5R2Q13319 367 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF362Q5T0B9 420 aaPredicted RBP10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 TSPO2Q5TGU0 170 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 FBXW9Q5XUX1 488 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 MEPCEQ7L2J0 689 aaKnown RBP10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 OR6V1Q8N148 313 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 FBXL14Q8N1E6 418 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 BBS1Q8NFJ9 593 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 RACGAP1Q9H0H5 632 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 CRLF2Q9HC73 371 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 SLC7A10Q9NS82 523 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 WARS2Q9UGM6 360 aaKnown RBP10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 PRSS50Q9UI38 385 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 COA3Q9Y2R0 106 aaPredicted RBP10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF281Q9Y2X9 895 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 TPRKBQ9Y3C4 175 aa10.8□□□□□ -0.68
CLSTN3-208ENST00000538933 CIB4A0PJX0 185 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 IRGMA1A4Y4 181 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 LYZL6O75951 148 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 FARS2O95363 451 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF823P16415 610 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 GABRB1P18505 474 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 EEF1B2P24534 225 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 EDNRAP25101 427 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 HTR1FP30939 366 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 NTF4P34130 210 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 SRP14P37108 136 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 PDLIM4P50479 330 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 FABP6P51161 128 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 TMED1Q13445 227 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 SGCAQ16586 387 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 MST1LQ2TV78 715 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 CEACAM16Q2WEN9 425 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 TIMM23BQ5SRD1 257 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 PHYHD1Q5SRE7 291 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 SLC25A30Q5SVS4 291 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 C6orf141Q5SZD1 244 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 C9orf135Q5VTT2 229 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 AADACL4Q5VUY2 407 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 SLC25A47Q6Q0C1 308 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 Q6ZT83 130 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 WDFY1Q8IWB7 410 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 FAM216AQ8WUB2 273 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 APH1BQ8WW43 257 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 GCDHQ92947 438 aaPredicted RBP10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 PTP4A1Q93096 173 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 CDADC1Q9BWV3 514 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 HCAR1Q9BXC0 346 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 KCNN2Q9H2S1 579 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 GPR35Q9HC97 309 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 AMBNQ9NP70 447 aa10.79□□□□□ -0.68
CLSTN3-208ENST00000538933 RYR3Q15413 4870 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms