RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CARD8Q9Y2G2 431 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 IGHV4OR15-8A0A075B7B6 117 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 A0A0G2JMP0 313 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 A0A0X1KG70 313 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 HTR3EA5X5Y0 456 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 SMIM23A6NLE4 172 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 CENPBD1B2RD01 187 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TRIM49D1C9J1S8 452 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 PRAC2D3DTV9 90 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 H3BSA7 217 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 K7EIL1 84 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 IFNL4K9M1U5 179 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 BMPR1BO00238 502 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 AZIN1O14977 448 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 LSM1O15116 133 aaKnown RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 HSPA12AO43301 675 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TPD52L2O43399 206 aaKnown RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 SYNGR3O43761 229 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 LYZL6O75951 148 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 KDM4BO94953 1096 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 GAS8-AS1O95177 125 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 STAMBPO95630 424 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 PTHP01270 115 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 IGKV1D-16P01601 117 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 MSMBP08118 114 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 ACP2P11117 423 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 NR2C1P13056 603 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 CBR1P16152 277 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 NPR2P20594 1047 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 KRTAP5-9P26371 169 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 POU1F1P28069 291 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 SFTPDP35247 375 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 GLRXP35754 106 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 PGM1P36871 562 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 POLR2HP52434 150 aaKnown RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 CLNS1AP54105 237 aaKnown RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 COPZ1P61923 177 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 KCNJ10P78508 379 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 CBX1P83916 185 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 MERTKQ12866 999 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 HSPB3Q12988 150 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 CD226Q15762 336 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 ATP6AP1LQ52LC2 224 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TNFAIP8L3Q5GJ75 292 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 CEP85LQ5SZL2 805 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 FAM122CQ6P4D5 195 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 C6orf89Q6UWU4 347 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TUBA1AQ71U36 451 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 SLC46A3Q7Z3Q1 461 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 NUFIP2Q7Z417 695 aaKnown RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 MUC20Q8N307 709 aaPredicted RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 RNF175Q8N4F7 328 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 ARFGAP2Q8N6H7 521 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 WDR31Q8NA23 367 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 OR4M2Q8NGB6 313 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 MFSD8Q8NHS3 518 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 MUC7Q8TAX7 377 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 RDH5Q92781 318 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 ERGIC1Q969X5 290 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TMEM186Q96B77 213 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TESCQ96BS2 214 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TLCD1Q96CP7 247 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TRNT1Q96Q11 434 aaKnown RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 OR5B2Q96R09 309 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 SDF2Q99470 211 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 DOK1Q99704 481 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 TAPBPLQ9BX59 468 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 RACGAP1Q9H0H5 632 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 MTHFD2LQ9H903 347 aaPredicted RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 CACYBPQ9HB71 228 aaKnown RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 TMBIM4Q9HC24 238 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 PALMDQ9NP74 551 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 SLCO1C1Q9NYB5 712 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 ZNF224Q9NZL3 707 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 STX18Q9P2W9 335 aaKnown RBP3.29□□□□□ -1.88
USP54-217ENST00000498213 MMP24Q9Y5R2 645 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 FLVCR1Q9Y5Y0 555 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 U3KQK5 164 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 CSMD3Q7Z407 3707 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 PLXNB1O43157 2135 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 NCKAP5O14513 1909 aa3.29□□□□□ -1.88
USP54-217ENST00000498213 FRAS1Q86XX4 4008 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 PRSS51A0A1B0GVH4 220 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 GMNCA6NCL1 334 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 CFAP73A6NFT4 308 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 A8MVM7 634 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 M0R233 179 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 POLR3GO15318 223 aaPredicted RBP3.28□□□□□ -1.88
USP54-217ENST00000498213 EFNA2O43921 213 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 RAD51DO75771 328 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 KRT33AO76009 404 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 PNPP00491 289 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 DBIP07108 87 aaKnown RBP3.28□□□□□ -1.88
USP54-217ENST00000498213 OR4A8P0C604 315 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 BCKDHAP12694 445 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 CPA3P15088 417 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 SDC1P18827 310 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 UQCRC2P22695 453 aa3.28□□□□□ -1.88
USP54-217ENST00000498213 TCEA1P23193 301 aaKnown RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms