RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 NEMFO60524 1076 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 SUPT3HO75486 399 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 HPRT1P00492 218 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 KRTAP1-4P0C5Y4 121 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CCDC172P0C7W6 258 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 PNMA6AP0CW24 399 aaPredicted RBP3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CD1EP15812 388 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF17P17021 662 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 ELK1P19419 428 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 GGT1P19440 569 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 PMCHP20382 165 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 PTNP21246 168 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CNR1P21554 472 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CCNE1P24864 410 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 GABRR2P28476 465 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CASQ1P31415 396 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 MAS1LP35410 378 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CSKP41240 450 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 NMUP48645 174 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CSNK1DP48730 415 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF138P52744 262 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CRISP3P54108 245 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 PRR3P79522 188 aaKnown RBP3.5□□□□□ -1.85
UPF3B-203ENST00000478840 TCP10Q12799 353 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 GABRA6Q16445 453 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CHRFAM7AQ494W8 412 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 TPRG1LQ5T0D9 272 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 ADNP2Q6IQ32 1131 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 SLC25A25Q6KCM7 469 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 SLC35D2Q76EJ3 337 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 C6orf120Q7Z4R8 191 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF584Q8IVC4 421 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 VKORC1L1Q8N0U8 176 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 ZFP41Q8N8Y5 198 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 OR13C9Q8NGT0 318 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 BLOC1S5Q8TDH9 187 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 APH1BQ8WW43 257 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 RDH5Q92781 318 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 FAM210BQ96KR6 192 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CD84Q9UIB8 345 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 DDX19BQ9UMR2 479 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 NKX2-6A6NCS4 301 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 KLK1P06870 262 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 GFAPP14136 432 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF19P17023 458 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 CSNK2A2P19784 350 aaPredicted RBP3.49□□□□□ -1.85
UPF3B-203ENST00000478840 WARSP23381 471 aaKnown RBP3.49□□□□□ -1.85
UPF3B-203ENST00000478840 HADHBP55084 474 aaKnown RBP3.49□□□□□ -1.85
UPF3B-203ENST00000478840 ATP6V0D1P61421 351 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 HERVK_113P61574 105 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 UNC119Q13432 240 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 POU2AF1Q16633 256 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 TMEM183BQ1AE95 376 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 C5orf64Q2M2E5 130 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
UPF3B-203ENST00000478840 C16orf87Q6PH81 154 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 HORMAD1Q86X24 394 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 TMEM183AQ8IXX5 376 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 TRAM1L1Q8N609 369 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 NOXO1Q8NFA2 376 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 RNF185Q96GF1 192 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 GPR21Q99679 349 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 MCUBQ9NWR8 336 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 DEC1Q9P2X7 70 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 PSG8Q9UQ74 426 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 SMAD5-AS1Q9Y6J3 95 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 CARMIL3Q8ND23 1372 aa3.49□□□□□ -1.85
UPF3B-203ENST00000478840 FHOD3Q2V2M9 1422 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF318Q5VUA4 2279 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 IGHV3-64DA0A0J9YX35 117 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 LOC100653049A0A140TA62 436 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 LAD1O00515 517 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 NME4O00746 187 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 PLPP1O14494 284 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 POLR1CO15160 346 aaPredicted RBP3.48□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF861PO60384 105 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 KRT34O76011 436 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 TDP2O95551 362 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 USF1P22415 310 aaPredicted RBP3.48□□□□□ -1.85
UPF3B-203ENST00000478840 CDKN2BP42772 138 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 FABP6P51161 128 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 CLDN6P56747 220 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 TAS2R39P59534 338 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 TSC22D1Q15714 1073 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 FAM83EQ2M2I3 478 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 RSPO1Q2MKA7 263 aaPredicted RBP3.48□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF829Q3KNS6 432 aaPredicted RBP3.48□□□□□ -1.85
UPF3B-203ENST00000478840 PTPN20Q4JDL3 420 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 LCE1EQ5T753 118 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 LIN9Q5TKA1 542 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 OR2W3Q7Z3T1 314 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF547Q8IVP9 402 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 ASCC1Q8N9N2 400 aaKnown RBP3.48□□□□□ -1.85
UPF3B-203ENST00000478840 SPERTQ8NA61 448 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 CHST4Q8NCG5 386 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 OR4A15Q8NGL6 344 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 OR10G4Q8NGN3 311 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 OR6Q1Q8NGQ2 317 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 MRGPRFQ96AM1 343 aa3.48□□□□□ -1.85
UPF3B-203ENST00000478840 NRBF2Q96F24 287 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms