RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GAL3ST1Q99999 423 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 PURGQ9UJV8 347 aaKnown RBP15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 COA3Q9Y2R0 106 aaPredicted RBP15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 STARD10Q9Y365 291 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 RGS9O75916 674 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 TXNDC12O95881 172 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 EPHA1P21709 976 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 ERFP50548 548 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 LSM6P62312 80 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 TNFAIP6P98066 277 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 SLC3A1Q07837 685 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 SCGB2A2Q13296 93 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 CCDC92Q53HC0 331 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 GLYATQ6IB77 296 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 C1QL2Q7Z5L3 287 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 ZER1Q7Z7L7 766 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 RNF148Q8N7C7 305 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 ZFAND2BQ8WV99 257 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 ELAC2Q9BQ52 826 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 NUAK2Q9H093 628 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 RERGLQ9H628 205 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 PLEK2Q9NYT0 353 aa15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 SAMD4AQ9UPU9 718 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 FAM32AQ9Y421 112 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-206ENST00000473405 ISPDA4D126 451 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 J3QLI3 93 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 HAX1O00165 279 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 DCTN6O00399 190 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 KHDRBS3O75525 346 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 IGHV2-70P01814 119 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 SEMG1P04279 462 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 ADRA2CP18825 462 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 TUBG1P23258 451 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 CDKN2AP42771 156 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 KCNMB1Q16558 191 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 DCAF12L2Q5VW00 463 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 DPY19L2P2Q6ZN68 376 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 OR52J3Q8NH60 311 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 OR1F12Q8NHA8 337 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 TUBG2Q9NRH3 451 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 UBAP1Q9NZ09 502 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 OPN4Q9UHM6 478 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 IER3IP1Q9Y5U9 82 aa15.87■□□□□ 0.13
CCDC88B-206ENST00000473405 MGAM2Q2M2H8 2515 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 UNC119BA6NIH7 251 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 RER1O15258 196 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 GPANK1O95872 356 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 FSHBP01225 129 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 DBHP09172 617 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 PRDX6P30041 224 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 LCN2P80188 198 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 C1orf94Q6P1W5 598 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 SMARCD3Q6STE5 483 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 TEX29Q8N6K0 151 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 ZNF283Q8N7M2 679 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 OR2Z1Q8NG97 314 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 HAVCR1Q96D42 359 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 CMBLQ96DG6 245 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 TSSK2Q96PF2 358 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 GORASP2Q9H8Y8 452 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 TMEM106BQ9NUM4 274 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 ADA2Q9NZK5 511 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 ATPIF1Q9UII2 106 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 NPTNQ9Y639 398 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 LHFPL6Q9Y693 200 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 V9GYQ6 96 aa15.86■□□□□ 0.13
CCDC88B-206ENST00000473405 IGLV1-36A0A0B4J1U3 117 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 PPP1R3DO95685 299 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 GATA3P23771 443 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 ZFP36P26651 326 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 HILS1P60008 231 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 HIST1H3AP68431 136 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 DBPQ10586 325 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 HLXQ14774 488 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 MEP1BQ16820 701 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 HIST2H3PS2Q5TEC6 136 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 USP43Q70EL4 1123 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 HIST2H3AQ71DI3 136 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 PEG10Q86TG7 708 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 FANK1Q8TC84 345 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 ZNF418Q8TF45 676 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 SAMD8Q96LT4 415 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 SIGLEC11Q96RL6 698 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 AURKCQ9UQB9 309 aa15.85■□□□□ 0.13
CCDC88B-206ENST00000473405 J3QW42 95 aa15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 TNFSF4P23510 183 aa15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 RPS6KA3P51812 740 aa15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 ZMYND11Q15326 602 aa15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 ITLN1Q8WWA0 313 aa15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 COG8Q96MW5 612 aa15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 DCLRE1CQ96SD1 692 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 KRCC1Q9NPI7 259 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 IL19Q9UHD0 177 aa15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 PCDHB10Q9UN67 800 aa15.84■□□□□ 0.13
CCDC88B-206ENST00000473405 DYNC1I1O14576 645 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 SNX3O60493 162 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 HSD17B1P14061 328 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 RAC2P15153 192 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 TNFRSF1AP19438 455 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 RGS6P49758 472 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms