RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SEC16AO15027 2179 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 IGHV3-20A0A0C4DH32 117 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 A0A1B0GV50 99 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 LOC390937A0A1W2PQ73 354 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 A0A1W2PRQ8 180 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 TMEM72A0PK05 275 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 PYCARD-AS1I3L0S3 204 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 M0R036 132 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 HLA-DPB1P04440 258 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 IFNW1P05000 195 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 DBIP07108 87 aaKnown RBP9.09□□□□□ -0.95
SYNE1-203ENST00000354674 UBCP0CG48 685 aaKnown RBP9.09□□□□□ -0.95
SYNE1-203ENST00000354674 LIMS3P0CW19 117 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 LIMS4P0CW20 117 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 DDTP30046 118 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 ART1P52961 327 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 PSMD4P55036 377 aaKnown RBP9.09□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF141Q15928 474 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 TMED4Q7Z7H5 227 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 BBS1Q8NFJ9 593 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 OR4C15Q8NGM1 316 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 WWTR1Q9GZV5 400 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF700Q9H0M5 742 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 TSPAN10Q9H1Z9 355 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-203ENST00000354674 HRASLSQ9HDD0 168 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 OPN4Q9UHM6 478 aa9.09□□□□□ -0.95
SYNE1-203ENST00000354674 AK6Q9Y3D8 172 aaKnown RBP9.09□□□□□ -0.95
SYNE1-203ENST00000354674 CENPVL1A0A0U1RR11 272 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 A6NNC1 897 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 FFAR1O14842 300 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 IL33O95760 270 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 QDPRP09417 244 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 NID1P14543 1247 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 S100A2P29034 98 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 MAGEB1P43366 347 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 ID4P47928 161 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 RAP2BP61225 183 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 NHLH1Q02575 133 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 PCOLCEQ15113 449 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 C4orf46Q504U0 113 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 FAM76BQ5HYJ3 339 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 TMEM164Q5U3C3 297 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 TCTN3Q6NUS6 607 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 SFXN4Q6P4A7 337 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 ZNF836Q6ZNA1 936 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 CEACAM19Q7Z692 300 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 OR8S1Q8NH09 359 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DUSP19Q8WTR2 217 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 HIST1H2BAQ96A08 127 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 IP6K3Q96PC2 410 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 NXF5Q9H1B4 397 aaKnown RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 ZDHHC8Q9ULC8 765 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 CFAP54Q96N23 3096 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 IGHV1-45A0A0A0MS14 117 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 CPSF4LA6NMK7 179 aaKnown RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 IGHEP01854 428 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 MRPL3P09001 348 aaKnown RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 RBM34P42696 430 aaKnown RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 SLC26A5P58743 744 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 PPIAP62937 165 aaKnown RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 IGF2-ASQ6U949 168 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 ZNF433Q8N7K0 673 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 OR51G2Q8NGK0 314 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 CT55Q8WUE5 264 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 NEU1Q99519 415 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 LPAR4Q99677 370 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 IFT27Q9BW83 186 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 CHST6Q9GZX3 395 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 FKRPQ9H9S5 495 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 BARX1Q9HBU1 254 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 RASL12Q9NYN1 266 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 PTRH2Q9Y3E5 179 aaKnown RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DMXL1Q9Y485 3027 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 A0A1B0GW55 424 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 OR14I1A6ND48 311 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 OR2AT4A6NND4 320 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 LRRN3E7EW58 273 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 F5H5P2 479 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 PEX12O00623 359 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DUX4L2P0CJ85 424 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DUX4L3P0CJ86 424 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DUX4L4P0CJ87 422 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DUX4L5P0CJ88 424 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DUX4L6P0CJ89 424 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DUX4L7P0CJ90 424 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 AQP2P41181 271 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 MTNR1AP48039 350 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 CCR9P51686 369 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 PLAURQ03405 335 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 SCGB2B2Q4G0G5 96 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 ACTBL2Q562R1 376 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 ZNF529Q6P280 563 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 TMEM200AQ86VY9 491 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 OR8J1Q8NGP2 316 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 TMED6Q8WW62 240 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 IMMP1LQ96LU5 166 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 NKX3-1Q99801 234 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-203ENST00000354674 PLA2G12AQ9BZM1 189 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 OR2S2Q9NQN1 319 aa9.08□□□□□ -0.96
SYNE1-203ENST00000354674 DUX4Q9UBX2 424 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms