RNA–Protein interactions for RNA: ENST00000254941.6

NIP7-202, Transcript of NIP7, nucleolar pre-rRNA processing protein, humanhuman

TSL 1 (best) BASIC

Gene NIP7, Length 1,887 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7-202ENST00000254941 YIF1BQ5BJH7 314 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 HIST2H3PS2Q5TEC6 136 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 HIST2H3AQ71DI3 136 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 ZNF627Q7L945 461 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 ZNF100Q8IYN0 542 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 PRSS35Q8N3Z0 413 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 LRRC18Q8N456 261 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 GJC3Q8NFK1 279 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 OR5AK2Q8NH90 309 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 WNT2BQ93097 391 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 KCTD12Q96CX2 325 aaKnown RBP8.32□□□□□ -1.08
NIP7-202ENST00000254941 FBXO17Q96EF6 278 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 C4orf45Q96LM5 186 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 MED18Q9BUE0 208 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 SLIRPQ9GZT3 109 aaKnown RBP8.32□□□□□ -1.08
NIP7-202ENST00000254941 CENPMQ9NSP4 180 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 GALNT8Q9NY28 637 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 FBXL3Q9UKT7 428 aa8.32□□□□□ -1.08
NIP7-202ENST00000254941 ZNF587BE7ETH6 402 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 DVL2O14641 736 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 CLPXO76031 633 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 CST2P09228 141 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 RPS19P39019 145 aaKnown RBP8.31□□□□□ -1.08
NIP7-202ENST00000254941 OR3A2P47893 321 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 MMP16P51512 607 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 SF3B4Q15427 424 aaKnown RBP eCLIP8.31□□□□□ -1.084e-9■■■■■ 31.2
NIP7-202ENST00000254941 WDR38Q5JTN6 314 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 NSUN5P2Q63ZY6 315 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 FAM214BQ7L5A3 538 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 CATSPERDQ86XM0 798 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.31□□□□□ -1.08
NIP7-202ENST00000254941 SLC22A24Q8N4F4 322 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 IL17RDQ8NFM7 739 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 OR13C5Q8NGS8 318 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 NIPAL2Q9H841 368 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 DDX28Q9NUL7 540 aaKnown RBP8.31□□□□□ -1.08
NIP7-202ENST00000254941 CCDC59Q9P031 241 aaKnown RBP8.31□□□□□ -1.08
NIP7-202ENST00000254941 UPB1Q9UBR1 384 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 MALT1Q9UDY8 824 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 R4GMQ9 66 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 PMF1-BGLAPU3KQ54 211 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 ATRXP46100 2492 aa8.31□□□□□ -1.08
NIP7-202ENST00000254941 TMEM269A0A1B0GVZ9 245 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 TMEM8BA6NDV4 472 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 WDR1O75083 606 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 GATBO75879 557 aaKnown RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 GABRA1P14867 456 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 B4GALT1P15291 398 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 CTSSP25774 331 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 SDC2P34741 201 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 PTGER4P35408 488 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 KIR3DL2P43630 455 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 TDGF1P3P51864 188 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 MFGE8Q08431 387 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 ZMAT1Q5H9K5 638 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 OR2A2Q6IF42 318 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 ZNF544Q6NX49 715 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 ZNF585AQ6P3V2 769 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 PAMR1Q6UXH9 720 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 UNQ9370/PRO34162Q6UXP9 181 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 CEACAM19Q7Z692 300 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 SYT9Q86SS6 491 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 CISD2Q8N5K1 135 aaKnown RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 TEX19Q8NA77 164 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 RGP1Q92546 391 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 PHYHIPQ92561 330 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 SH3GL3Q99963 347 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 COMMD4Q9H0A8 199 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 PPIL3Q9H2H8 161 aaKnown RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 CXorf56Q9H5V9 222 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 C12orf49Q9H741 205 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 EMC9Q9Y3B6 208 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 ARPC4-TTLL3A0A0A6YYG9 625 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 MED19A0JLT2 244 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 MBD3L4A6NDZ8 208 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 MBD3L3A6NE82 208 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 MBD3L5A6NJ08 208 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 FIGNL2A6NMB9 653 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 LOC110117498-PIK3R3F6TDL0 507 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 CDRT1O95170 752 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 CALRP27797 417 aaKnown RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 SOX6P35712 828 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 GRB2P62993 217 aaKnown RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 FAPQ12884 760 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 ZNF829Q3KNS6 432 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 CCDC92Q53HC0 331 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 FAM27D1Q5T7N8 215 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 FBXW9Q5XUX1 488 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 KLHL24Q6TFL4 600 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 ZNF813Q6ZN06 617 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 LINC00299Q6ZSB3 139 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 ABHD12BQ7Z5M8 362 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 GCNT2Q8N0V5 402 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 UBE2J2Q8N2K1 259 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 ZNF676Q8N7Q3 588 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 C9orf106Q8NAJ2 232 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 MBD3L2Q8NHZ7 208 aaPredicted RBP8.3□□□□□ -1.08
NIP7-202ENST00000254941 SLC25A46Q96AG3 418 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 OR14A2Q96R54 314 aa8.3□□□□□ -1.08
NIP7-202ENST00000254941 ATF6BQ99941 703 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms