RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TUSC5Q8IXB3 177 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 GPR137CQ8N3F9 429 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 PPP1R14AQ96A00 147 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 ALKBH3Q96Q83 286 aaPredicted RBP14.88□□□□□ -0.03
CLN3-252ENST00000636907 TAAR6Q96RI8 345 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 CRLF2Q9HC73 371 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 SMURF1Q9HCE7 757 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 EMC3Q9P0I2 261 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 CLEC4AQ9UMR7 237 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 SLC22A13Q9Y226 551 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 R4GMQ9 66 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 FRYQ5TBA9 3013 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 CACNA1CQ13936 2221 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 TMEM212A6NML5 194 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 CTDSP2O14595 271 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 UCHL1P09936 223 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 MYL9P24844 172 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 CCR9P51686 369 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 ENDOGQ14249 297 aaKnown RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 ODF4Q2M2E3 257 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 CATSPERDQ86XM0 798 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 RDH10Q8IZV5 341 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 MFSD4AQ8N468 514 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 ZNF676Q8N7Q3 588 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 IL17RDQ8NFM7 739 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 S100ZQ8WXG8 99 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 COMMD4Q9H0A8 199 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 RNF122Q9H9V4 155 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 CALHM2Q9HA72 323 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 BCO1Q9HAY6 547 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 B3GAT2Q9NPZ5 323 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 DKK4Q9UBT3 224 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 GTF2A1LQ9UNN4 478 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 PEX16Q9Y5Y5 336 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 PHF3Q92576 2039 aaKnown RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 A0A1B0GVC2 190 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 IQCMA0A1B0GVH7 501 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 ACOD1A6NK06 481 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 ZNF724A8MTY0 619 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 ZNF879B4DU55 563 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 CLDN25C9JDP6 229 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 RER1O15258 196 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 PIN1P1O15428 100 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 MRPL33O75394 65 aaKnown RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 MRPS34P82930 218 aaKnown RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 DCTN2Q13561 401 aaKnown RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 ZNF829Q3KNS6 432 aaPredicted RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 NR2C2APQ86WQ0 139 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 SIAH3Q8IW03 269 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 RBMXL3Q8N7X1 1067 aaKnown RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 OR10AC1Q8NH08 325 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 CPT1CQ8TCG5 803 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 PRDM14Q9GZV8 571 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 PLGRKTQ9HBL7 147 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 PNRC2Q9NPJ4 139 aaKnown RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 CRNNQ9UBG3 495 aaPredicted RBP14.87□□□□□ -0.03
CLN3-252ENST00000636907 EMC9Q9Y3B6 208 aa14.87□□□□□ -0.03
CLN3-252ENST00000636907 APC2O95996 2303 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 TRBV5-5A0A0J9YX44 114 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 ZNF878C9JN71 531 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 LOC110117498-PIK3R3F6TDL0 507 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 ZNHIT1O43257 154 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 ARL6IP5O75915 188 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 TGM6O95932 706 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 S100A5P33763 92 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 ZNF846Q147U1 533 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 RNPS1Q15287 305 aaKnown RBP14.86□□□□□ -0.03
CLN3-252ENST00000636907 Q499Y3 187 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 HSD17B12Q53GQ0 312 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 RIPPLY2Q5TAB7 128 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 TSPO2Q5TGU0 170 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 ZNF544Q6NX49 715 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 LRRC18Q8N456 261 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 PHYHIPQ92561 330 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 ORAI1Q96D31 301 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 DERL3Q96Q80 235 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 SLCO5A1Q9H2Y9 848 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 GPR35Q9HC97 309 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 HMG20AQ9NP66 347 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 NOX4Q9NPH5 578 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 G6PC2Q9NQR9 355 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 TMEM38BQ9NVV0 291 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 PARPBPQ9NWS1 579 aa14.86□□□□□ -0.03
CLN3-252ENST00000636907 TRAV1-2A0A0B4J238 106 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 MKRN2OSH3BPM6 223 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 H3BSH0 61 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 J3QRK9 145 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 K7ENP7 123 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 AQP7O14520 342 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 IGHV3-9P01782 118 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 YES1P07947 543 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 OCM2P0CE71 109 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 DCTDP32321 178 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 INAQ16352 499 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 CEACAM16Q2WEN9 425 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 INO80CQ6PI98 192 aaPredicted RBP14.85□□□□□ -0.03
CLN3-252ENST00000636907 TPRA1Q86W33 373 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 MCEMP1Q8IX19 187 aa14.85□□□□□ -0.03
CLN3-252ENST00000636907 OR51A4Q8NGJ6 313 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms