RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 SLAMF6Q96DU3 332 aa9.34□□□□□ -0.91
VPS11-208ENST00000621676 SLC25A44Q96H78 314 aaPredicted RBP9.34□□□□□ -0.91
VPS11-208ENST00000621676 PGLYRP3Q96LB9 341 aa9.34□□□□□ -0.91
VPS11-208ENST00000621676 SGCZQ96LD1 299 aa9.34□□□□□ -0.91
VPS11-208ENST00000621676 DMRTB1Q96MA1 342 aa9.34□□□□□ -0.91
VPS11-208ENST00000621676 FZR1Q9UM11 496 aa9.34□□□□□ -0.91
VPS11-208ENST00000621676 PCDHGB6Q9Y5F9 930 aa9.34□□□□□ -0.91
VPS11-208ENST00000621676 TRAV6A0A075B6T7 132 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 A0A1W2PP11 408 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 E9PLN8 166 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 TRAF3IP2O43734 574 aaPredicted RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 LANCL1O43813 399 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 KDM4BO94953 1096 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 IGHA1P01876 353 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 ZNF883P0CG24 379 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 CD40LGP29965 261 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 RIDAP52758 137 aaKnown RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 SELENBP1Q13228 472 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 TPBGQ13641 420 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 MFSD13AQ14CX5 517 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 TSPO2Q5TGU0 170 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 LINGO2Q7L985 606 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 OTOSQ8NHW6 89 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 LGALS14Q8TCE9 139 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 CMBLQ96DG6 245 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 GPER1Q99527 375 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 ANGPTL4Q9BY76 406 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 MIXL1Q9H2W2 232 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 TAS2R4Q9NYW5 299 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 EXOGQ9Y2C4 368 aaKnown RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 CSMD1Q96PZ7 3565 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 UTP20O75691 2785 aaKnown RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 LYZL6O75951 148 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 PDGFAP04085 211 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 LIPCP11150 499 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 SELEP16581 610 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 SRMP19623 302 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 ZNF846Q147U1 533 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 ZNF627Q7L945 461 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 SLC16A9Q7RTY1 509 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 P4HA3Q7Z4N8 544 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 NRARPQ7Z6K4 114 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 OR13C3Q8NGS6 347 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 FER1L6-AS2Q96M78 137 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 TRIB1Q96RU8 372 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 SLC19A3Q9BZV2 496 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 KLHL9Q9P2J3 617 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 ZNF629Q9UEG4 869 aaPredicted RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 GDF2Q9UK05 429 aaPredicted RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 NOSIPQ9Y314 301 aaKnown RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 CMAHPQ9Y471 501 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 NCKAP5O14513 1909 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 MRPL33O75394 65 aaKnown RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 LCATP04180 440 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 TPOP07202 933 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 ALKBH1Q13686 389 aaKnown RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 SLC10A1Q14973 349 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 SLC25A25Q6KCM7 469 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 SFXN4Q6P4A7 337 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 CHST4Q8NCG5 386 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 OR4M1Q8NGD0 313 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 OR9K2Q8NGE7 335 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 PIGTQ969N2 578 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 LIN7BQ9HAP6 207 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 MRPL39Q9NYK5 338 aaKnown RBP9.33□□□□□ -0.92
VPS11-208ENST00000621676 UPB1Q9UBR1 384 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 B3GALT5Q9Y2C3 310 aa9.33□□□□□ -0.92
VPS11-208ENST00000621676 KHDRBS3O75525 346 aaKnown RBP9.32□□□□□ -0.92
VPS11-208ENST00000621676 MT-ATP6P00846 226 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 ZNF24P17028 368 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 HTR3AP46098 478 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 POU4F2Q12837 409 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 AIMP2Q13155 320 aaKnown RBP9.32□□□□□ -0.92
VPS11-208ENST00000621676 DTX1Q86Y01 620 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 ZNF100Q8IYN0 542 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 GPR137CQ8N3F9 429 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 Q8N402 240 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 SNIP1Q8TAD8 396 aaKnown RBP9.32□□□□□ -0.92
VPS11-208ENST00000621676 LRFN5Q96NI6 719 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 DDOQ99489 341 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 NDEL1Q9GZM8 345 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 COMMD4Q9H0A8 199 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 BANF2Q9H503 90 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 AUNIPQ9H7T9 357 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 ASCL3Q9NQ33 180 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 NLKQ9UBE8 527 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 BOKQ9UMX3 212 aaPredicted RBP9.32□□□□□ -0.92
VPS11-208ENST00000621676 PCDHGB7Q9Y5F8 929 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 CCDC168Q8NDH2 2452 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 FLNCQ14315 2725 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 IGLV1-36A0A0B4J1U3 117 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 RAD51DO75771 328 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 SP1P08047 785 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 CD46P15529 392 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 KIR3DL2P43630 455 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 DAP3P51398 398 aaKnown RBP9.32□□□□□ -0.92
VPS11-208ENST00000621676 EFNB2P52799 333 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 FOXO1Q12778 655 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 HIKESHIQ53FT3 197 aa9.32□□□□□ -0.92
VPS11-208ENST00000621676 GPR139Q6DWJ6 353 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms