RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 V9GYQ6 96 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RTTNQ86VV8 2226 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PLXNA4Q9HCM2 1894 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SDK1Q7Z5N4 2213 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 IGHV3-20A0A0C4DH32 117 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 A0A1W2PRV1 198 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SMIM30A4D0T7 59 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 A4D1N5 150 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 C5orf51A6NDU8 294 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 METTL15A6NJ78 407 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 OR2AG2A6NM03 316 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 K7ENP7 123 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 KCNK1O00180 336 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PSMA7O14818 248 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CTNSO60931 367 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SCN2BO60939 215 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 LRCH4O75427 683 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 WBP4O75554 376 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 OR2B3O76000 313 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TM7SF2O76062 418 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NOL4O94818 638 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RPP14O95059 124 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TDP2O95551 362 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PTTG1O95997 202 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 GH1P01241 217 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MT-ND1P03886 318 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RLN1P04808 185 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CRHP06850 196 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CHRNGP07510 517 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ERCC1P07992 297 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SERPINA6P08185 405 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 GUSBP08236 651 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 LINC00614P0C842 121 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 GIMD1P0DJR0 217 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 HSPD1P10809 573 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 FOLR2P14207 255 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF30P17039 623 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SPI1P17947 270 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PSMC3P17980 439 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 LBPP18428 481 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RAB3BP20337 219 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PTNP21246 168 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NT5EP21589 574 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PAICSP22234 425 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ATP5A1P25705 553 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 LMO2P25791 158 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 IL12AP29459 219 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ERP29P30040 261 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PPP2R1BP30154 601 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SLC1A2P43004 574 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MAGEB1P43366 347 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CDKN1BP46527 198 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CAPZBP47756 277 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CCR6P51684 374 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SUCLG1P53597 346 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CRYBB1P53674 252 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NAPAP54920 295 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TMBIM6P55061 237 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CLDN8P56748 225 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 KCNK10P57789 538 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 KIAA1024LP59773 190 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 KRTAP10-3P60369 221 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NUTF2P61970 127 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 BTG1P62324 171 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ARF5P84085 180 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 IL9RQ01113 521 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TNFRSF9Q07011 255 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SCN1BQ07699 218 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RGS1Q08116 209 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TGM3Q08188 693 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RBBP4Q09028 425 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CNTN1Q12860 1018 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RPA4Q13156 261 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SKP2Q13309 424 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 KRT31Q15323 416 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SLC9A3R2Q15599 337 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TOMM34Q15785 309 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NEDD8Q15843 81 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 USF2Q15853 346 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NRF1Q16656 503 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CDO1Q16878 200 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 EXOC3L4Q17RC7 722 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 KCTD19Q17RG1 926 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RNF212Q495C1 297 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RFTN2Q52LD8 501 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 LBHQ53QV2 105 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MUC21Q5SSG8 566 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 DDI2Q5TDH0 399 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MARC1Q5VT66 337 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NXNL2Q5VZ03 156 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TXNRD3NBQ6F5E7 133 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ELP2Q6IA86 826 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ADNP2Q6IQ32 1131 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ATRAIDQ6UW56 229 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 BTNL8Q6UX41 500 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 DLEU7Q6UYE1 221 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SCARA5Q6ZMJ2 495 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MBOAT1Q6ZNC8 495 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 GCNT7Q6ZNI0 430 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 C17orf107Q6ZR85 190 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms