RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 YIF1BQ5BJH7 314 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZMAT1Q5H9K5 638 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 C10orf128Q5T292 105 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZNF324BQ6AW86 544 aaPredicted RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 LRFN4Q6PJG9 635 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 LRRN1Q6UXK5 716 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 UNQ9370/PRO34162Q6UXP9 181 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 CEACAM19Q7Z692 300 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 OR2G2Q8NGZ5 317 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 RNF128Q8TEB7 428 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 SNRNP40Q96DI7 357 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 GPR137Q96N19 417 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 PDCD1LG2Q9BQ51 273 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 PPIL3Q9H2H8 161 aaKnown RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 ELOVL3Q9HB03 270 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 GLTPQ9NZD2 209 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 FRRS1LQ9P0K9 344 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 FOXD3Q9UJU5 478 aaPredicted RBP12.56□□□□□ -0.4
CUX1-209ENST00000487284 RCE1Q9Y256 329 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZNF281Q9Y2X9 895 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 FLVCR1Q9Y5Y0 555 aa12.56□□□□□ -0.4
CUX1-209ENST00000487284 ZFYVE26Q68DK2 2539 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 GTF3C1Q12789 2109 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 A0A1B0GTH9 108 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 A0A1W2PPL8 197 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 OR4C45A6NMZ5 311 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 AQP7O14520 342 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 QDPRP09417 244 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 CALRP27797 417 aaKnown RBP12.55□□□□□ -0.4
CUX1-209ENST00000487284 BCL2A1Q16548 175 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 FAM27D1Q5T7N8 215 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 FOXL2NBQ6ZUU3 175 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 KRT77Q7Z794 578 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 CROCCP3Q8IVE0 287 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 MEIOBQ8N635 442 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 OR10H5Q8NGA6 315 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 RGP1Q92546 391 aaPredicted RBP12.55□□□□□ -0.4
CUX1-209ENST00000487284 PHYHIPQ92561 330 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 INTS12Q96CB8 462 aaKnown RBP12.55□□□□□ -0.4
CUX1-209ENST00000487284 WDYHV1Q96HA8 205 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 ZNF845Q96IR2 970 aaPredicted RBP12.55□□□□□ -0.4
CUX1-209ENST00000487284 C4orf45Q96LM5 186 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 KCNS3Q9BQ31 491 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 MROQ9BYG7 248 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 ASF1BQ9NVP2 202 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 CYB5R1Q9UHQ9 305 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 UGT2A1Q9Y4X1 527 aa12.55□□□□□ -0.4
CUX1-209ENST00000487284 TRAV1-2A0A0B4J238 106 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 J3QRK9 145 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 CYTIPO60759 359 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 TMCC2O75069 709 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 ZNF254O75437 659 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 UCHL1P09936 223 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 CFL1P23528 166 aaKnown RBP12.54□□□□□ -0.4
CUX1-209ENST00000487284 MYL9P24844 172 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 ETV6P41212 452 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 CCR9P51686 369 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 TDGF1P3P51864 188 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 RIDAP52758 137 aaKnown RBP12.54□□□□□ -0.4
CUX1-209ENST00000487284 DEGS2Q6QHC5 323 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 DCXRQ7Z4W1 244 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 TPRA1Q86W33 373 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 LINC00346Q8IVM7 164 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 OR6N1Q8NGY5 312 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 RNF133Q8WVZ7 376 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 ROBO4Q8WZ75 1007 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 SLX1AQ9BQ83 275 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 CAMK2AQ9UQM7 478 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 LRP12Q9Y561 859 aa12.54□□□□□ -0.4
CUX1-209ENST00000487284 RP1L1Q8IWN7 2480 aaPredicted RBP12.53□□□□□ -0.4
CUX1-209ENST00000487284 SMIM30A4D0T7 59 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 TMEM212A6NML5 194 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 CTDSP2O14595 271 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 SRSF10O75494 262 aaKnown RBP12.53□□□□□ -0.4
CUX1-209ENST00000487284 ARL6IP5O75915 188 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 CPN1P15169 458 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 KIR3DL2P43630 455 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 SELENOPP49908 381 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 RASGEF1BQ0VAM2 473 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 PHYHD1Q5SRE7 291 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 FCRLAQ7L513 359 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 FGD2Q7Z6J4 655 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 CCDC190Q86UF4 302 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 C20orf196Q8IYI0 205 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 PRSS35Q8N3Z0 413 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 OR5AK2Q8NH90 309 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 AP3S1Q92572 193 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 SARAFQ96BY9 339 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 WBP1Q96G27 269 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 WDFY2Q96P53 400 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 OR14A2Q96R54 314 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 PRDM14Q9GZV8 571 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 POLE4Q9NR33 117 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 LHFPL6Q9Y693 200 aa12.53□□□□□ -0.4
CUX1-209ENST00000487284 SMG1Q96Q15 3661 aaKnown RBP12.53□□□□□ -0.4
CUX1-209ENST00000487284 IGKV3D-15A0A087WSY6 115 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 TRBV5-5A0A0J9YX44 114 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 TTLL8A6PVC2 850 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 CD40LGP29965 261 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 CAV3P56539 151 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms