RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 H2BFMP0C1H6 154 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 CFL1P23528 166 aaKnown RBP12.6□□□□□ -0.39
USP39-207ENST00000450066 DCTDP32321 178 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 KIR3DL2P43630 455 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 INAQ16352 499 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 SGCAQ16586 387 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 RIPPLY2Q5TAB7 128 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 CHMP1BQ7LBR1 199 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 CATSPERDQ86XM0 798 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.6□□□□□ -0.39
USP39-207ENST00000450066 CROCCP3Q8IVE0 287 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 ZNF676Q8N7Q3 588 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 FNDC9Q8TBE3 224 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 NABP1Q96AH0 204 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 RNF122Q9H9V4 155 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 B3GAT2Q9NPZ5 323 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 R4GMQ9 66 aa12.6□□□□□ -0.39
USP39-207ENST00000450066 ARPC4-TTLL3A0A0A6YYG9 625 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 TRBV5-5A0A0J9YX44 114 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 MAPK3P27361 379 aaPredicted RBP12.59□□□□□ -0.39
USP39-207ENST00000450066 CAV3P56539 151 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 MRPS34P82930 218 aaKnown RBP12.59□□□□□ -0.39
USP39-207ENST00000450066 RNPS1Q15287 305 aaKnown RBP12.59□□□□□ -0.39
USP39-207ENST00000450066 Q499Y3 187 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 CFAP77Q6ZQR2 320 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 GPR137CQ8N3F9 429 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 OR10S1Q8NGN2 331 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 CPT1CQ8TCG5 803 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 ZNF416Q9BWM5 594 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 PRRG4Q9BZD6 226 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 SLC24A3Q9HC58 644 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 CRLF2Q9HC73 371 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 PALMDQ9NP74 551 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 CENPMQ9NSP4 180 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 PARPBPQ9NWS1 579 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 MGAQ8IWI9 3026 aa12.59□□□□□ -0.39
USP39-207ENST00000450066 DNAJC13O75165 2243 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 ZNF724A8MTY0 619 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 TAF4O00268 1085 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 NCR1O76036 304 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 ETV6P41212 452 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 MMP16P51512 607 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 MFGE8Q08431 387 aaPredicted RBP12.58□□□□□ -0.39
USP39-207ENST00000450066 ZNF169Q14929 603 aaPredicted RBP12.58□□□□□ -0.39
USP39-207ENST00000450066 C3AR1Q16581 482 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 HSD17B12Q53GQ0 312 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 NR2C2APQ86WQ0 139 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 IL17RDQ8NFM7 739 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 GPR148Q8TDV2 347 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 HTRA1Q92743 480 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 DERL3Q96Q80 235 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 BCO1Q9HAY6 547 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 NOX4Q9NPH5 578 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 FBXL3Q9UKT7 428 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 NOSIPQ9Y314 301 aaKnown RBP12.58□□□□□ -0.39
USP39-207ENST00000450066 EMC9Q9Y3B6 208 aa12.58□□□□□ -0.39
USP39-207ENST00000450066 ANKRD11Q6UB99 2663 aaPredicted RBP12.58□□□□□ -0.4
USP39-207ENST00000450066 APC2O95996 2303 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 TMEM269A0A1B0GVZ9 245 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 A0A1W2PPK0 400 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 ZNF878C9JN71 531 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 J3QRK9 145 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 RGS5O15539 181 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 MRPL33O75394 65 aaKnown RBP12.58□□□□□ -0.4
USP39-207ENST00000450066 OCM2P0CE71 109 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 NPR2P20594 1047 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 ZNF45Q02386 682 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 SPACA3Q8IXA5 215 aa12.58□□□□□ -0.4
USP39-207ENST00000450066 ZNF837Q96EG3 531 aaPredicted RBP12.58□□□□□ -0.4
USP39-207ENST00000450066 A0A1B0GVC2 190 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 LOC110117498-PIK3R3F6TDL0 507 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 PIN1P1O15428 100 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 SRMP19623 302 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 RAB3BP20337 219 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 ENDOGQ14249 297 aaKnown RBP12.57□□□□□ -0.4
USP39-207ENST00000450066 FAM27BQ5VT28 67 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 CCDC190Q86UF4 302 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 TUSC5Q8IXB3 177 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 RDH10Q8IZV5 341 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 THRSPQ92748 146 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 WDFY2Q96P53 400 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 ATF6BQ99941 703 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 LINC00470Q9BZP3 86 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 NIPAL2Q9H841 368 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 PNRC2Q9NPJ4 139 aaKnown RBP12.57□□□□□ -0.4
USP39-207ENST00000450066 G6PC2Q9NQR9 355 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 DKK4Q9UBT3 224 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 GTF2A1LQ9UNN4 478 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 CAMK2AQ9UQM7 478 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 SLC22A13Q9Y226 551 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 CMAHPQ9Y471 501 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 BOD1L1Q8NFC6 3051 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 OR6C65A6NJZ3 312 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 ACOD1A6NK06 481 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 RER1O15258 196 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 RAF1P04049 648 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 YES1P07947 543 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 TNFSF8P32971 234 aa12.57□□□□□ -0.4
USP39-207ENST00000450066 EIF2S3P41091 472 aaKnown RBP12.57□□□□□ -0.4
USP39-207ENST00000450066 ODF4Q2M2E3 257 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms