RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SUCNR1Q9BXA5 334 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 RNF32Q9H0A6 362 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 DICER1Q9UPY3 1922 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 TPRP12270 2363 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR7C2O60412 319 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 B3GALNT1O75752 331 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 C1SP09871 688 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CCR5P51681 352 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SFXN4Q6P4A7 337 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR13C9Q8NGT0 318 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR51F2Q8NH61 342 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM106AQ96A25 262 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 WDR61Q9GZS3 305 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 RAB6CQ9H0N0 254 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SEBOXQ9HB31 216 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ADAMTS5Q9UNA0 930 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SEC16AO15027 2179 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 MEIKINA0A087WXM9 373 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PMS2P2O95744 297 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 APEX1P27695 318 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 RAB1AP62820 205 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 NFATC3Q12968 1075 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF705AQ6ZN79 300 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 LRRC15Q8TF66 581 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CRLF2Q9HC73 371 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 UFSP2Q9NUQ7 469 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CLCF1Q9UBD9 225 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 DHCR7Q9UBM7 475 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CCDC187A0A096LP49 1063 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PPIHO43447 177 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 NRASP01111 189 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 DEFA6Q01524 100 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 EIF3IQ13347 325 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ACSM5Q6NUN0 579 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SFTPA2Q8IWL1 248 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SFTPA1Q8IWL2 248 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 DTWD1Q8N5C7 304 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR6M1Q8NGM8 313 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR5R1Q8NH85 324 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PINX1Q96BK5 328 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 MACROD1Q9BQ69 325 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 AMBRA1Q9C0C7 1298 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 FBXL4Q9UKA2 621 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 LRRC37A3O60309 1634 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 MYO5AQ9Y4I1 1855 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CLDN24A6NM45 220 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 P2RY10O00398 339 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CACNG3O60359 315 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ABCD3P28288 659 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 GPR19Q15760 415 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 GLYATL3Q5SZD4 288 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 RETREG3Q86VR2 466 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CLDN22Q8N7P3 220 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR2M3Q8NG83 312 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 KCNG2Q9UJ96 466 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ADAM11O75078 769 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 CEACAM3P40198 252 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 RNPS1Q15287 305 aaKnown RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM97Q5BJF2 176 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 DESI1Q6ICB0 168 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF620Q6ZNG0 422 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 YRDCQ86U90 279 aaKnown RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SIGLECL1Q8N7X8 197 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 OR10P1Q8NGE3 313 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 OR5D18Q8NGL1 313 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 MVB12AQ96EY5 273 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 FCRL1Q96LA6 429 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 TAAR9Q96RI9 348 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 LIN28AQ9H9Z2 209 aaKnown RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 LRP6O75581 1613 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 A0A0B4J2A0 478 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SNNO75324 88 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 IVDP26440 423 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 PSMB5P28074 263 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ETV4P43268 484 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 UQCRFS1P47985 274 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 RPL27P61353 136 aaKnown RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 PRTGQ2VWP7 1150 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 LYRM7Q5U5X0 104 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 MARCH3Q86UD3 253 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 NEURL3Q96EH8 262 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM56Q96MV1 263 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 TAF9BQ9HBM6 251 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 RAB18Q9NP72 206 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 FBXO34Q9NWN3 711 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SLC23A1Q9UHI7 598 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SHPKQ9UHJ6 478 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 SCN9AQ15858 1988 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 KRBOX1C9JBD0 128 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 PPP5D1E7EU14 171 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 TNFSF11O14788 317 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 OR5H8P0DN80 308 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 CLDN10P78369 228 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 Q56UQ5 140 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 B3GNTL1Q67FW5 361 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ANGPTL5Q86XS5 388 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 C7orf43Q8WVR3 580 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 ST8SIA1Q92185 356 aa6.28□□□□□ -1.4
SCN1A-204ENST00000423058 GNPNAT1Q96EK6 184 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-204ENST00000423058 LHX3Q9UBR4 397 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms