RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 B4DSR2 109 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 WNT9BO14905 357 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 KHDRBS3O75525 346 aaKnown RBP18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 TXNDC12O95881 172 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 TFP02787 698 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 MSX2P35548 267 aaPredicted RBP18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 ZNF81P51508 661 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 ARHGDIAP52565 204 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 SMIM11AP58511 58 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 FAM209AQ5JX71 171 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 ZER1Q7Z7L7 766 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 ADCK1Q86TW2 530 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 NSMCE2Q96MF7 247 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 LRRC37BQ96QE4 947 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 DECR2Q9NUI1 292 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 IL20RAQ9UHF4 553 aa18.48■□□□□ 0.55
CCDC28B-201ENST00000373602 IGHV1-69-2A0A0G2JMI3 117 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 SOCS2O14508 198 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 IMPA2O14732 288 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 ARPC2O15144 300 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 DOK2O60496 412 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 SLC16A7O60669 478 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 IGHV1-46P01743 117 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 RPS6KA3P51812 740 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 LSM6P62312 80 aaKnown RBP18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 TSTQ16762 297 aaKnown RBP18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 ARL9Q6T311 187 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 PTCHD4Q6ZW05 846 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 GLB1L2Q8IW92 636 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 SAP30LQ9HAJ7 183 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 CYSLTR2Q9NS75 346 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 TBCCD1Q9NVR7 557 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 TREM2Q9NZC2 230 aa18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 COA3Q9Y2R0 106 aaPredicted RBP18.47■□□□□ 0.55
CCDC28B-201ENST00000373602 PLSCR5A0PG75 271 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 FAM157AC9JC47 383 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 SGCEO43556 437 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 DCTN3O75935 186 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 GADD45GO95257 159 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 ADH4P08319 380 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 LIPAP38571 399 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 HTR5AP47898 357 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 LMO4P61968 165 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 SPIBQ01892 262 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 AQP6Q13520 282 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 SPATS1Q496A3 300 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 SMARCD3Q6STE5 483 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 USP51Q70EK9 711 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 VASH1Q7L8A9 365 aaPredicted RBP18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 PHC2Q8IXK0 858 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 MCUR1Q96AQ8 359 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 NUAK2Q9H093 628 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 RERGLQ9H628 205 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 NDE1Q9NXR1 346 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 CGGBP1Q9UFW8 167 aaPredicted RBP18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 KLHL21Q9UJP4 597 aa18.46■□□□□ 0.55
CCDC28B-201ENST00000373602 ZSCAN5BA6NJL1 495 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 TPD52L2O43399 206 aaKnown RBP18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 SPRY3O43610 288 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 ABHD16AO95870 558 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 GAAP10253 952 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 PCMT1P22061 227 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 TUBG1P23258 451 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 CDKN2AP42771 156 aaKnown RBP18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 KCNMB1Q16558 191 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 RFX4Q33E94 735 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 C16orf89Q6UX73 402 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 GLCCI1Q86VQ1 547 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 ELMOD3Q96FG2 381 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 TUBG2Q9NRH3 451 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 PLEK2Q9NYT0 353 aa18.45■□□□□ 0.54
CCDC28B-201ENST00000373602 MPZL1O95297 269 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 PPP1R3DO95685 299 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 FABP3P05413 133 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 FPR3P25089 353 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 PSG7Q13046 419 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 HFEQ30201 348 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 AVPI1Q5T686 147 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 OTPQ5XKR4 325 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 DEFB107AQ8IZN7 70 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 NPEPL1Q8NDH3 523 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 FANK1Q8TC84 345 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 TMEM186Q96B77 213 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 ERMAPQ96PL5 475 aaPredicted RBP18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 OR52D1Q9H346 318 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 IL1RAPQ9NPH3 570 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 ASH2LQ9UBL3 628 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 CACNG2Q9Y698 323 aa18.44■□□□□ 0.54
CCDC28B-201ENST00000373602 SVEP1Q4LDE5 3571 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 MXRA5Q9NR99 2828 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 OR6C6A6NF89 314 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 CLDN25C9JDP6 229 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 ARPC3O15145 178 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 OR10H3O60404 316 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 MSMBP08118 114 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 GSTM3P21266 225 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 SLC6A6P31641 620 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 MVKQ03426 396 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 CCDC92Q53HC0 331 aaPredicted RBP18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 ZMAT1Q5H9K5 638 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms