RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 SHQ1Q6PI26 577 aaKnown RBP13.13□□□□□ -0.31
LIG1-219ENST00000600055 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.13□□□□□ -0.31
LIG1-219ENST00000600055 AMIGO2Q86SJ2 522 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 TGIF2LYQ8IUE0 185 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 C10orf67Q8IYJ2 551 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 LNX2Q8N448 690 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 IQCF1Q8N6M8 205 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 DUS3LQ96G46 650 aaKnown RBP13.13□□□□□ -0.31
LIG1-219ENST00000600055 SNX18Q96RF0 628 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 DDOQ99489 341 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 OR51B6Q9H340 312 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 ZNF442Q9H7R0 627 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 CDH20Q9HBT6 801 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 TIMM10BQ9Y5J6 103 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 HEATR1Q9H583 2144 aaKnown RBP13.13□□□□□ -0.31
LIG1-219ENST00000600055 LOC100509620A0A075B734 347 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 C12orf71A8MTZ7 269 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 H3BN98 237 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 PTHP01270 115 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 IGHV4-39P01824 125 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 FAM157BP0CG42 384 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 GAAP10253 952 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 CCNOP22674 350 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 POU1F1P28069 291 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 APLNRP35414 380 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 PCBD1P61457 104 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 GALK2Q01415 458 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 KPNB1Q14974 876 aaKnown RBP13.12□□□□□ -0.31
LIG1-219ENST00000600055 TBC1D28Q2M2D7 210 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 SHEQ5VZ18 495 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 DNM1P34Q6PK57 102 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 ZBTB46Q86UZ6 589 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 SLC37A3Q8NCC5 494 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 OR2T33Q8NG76 320 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 ZNRF4Q8WWF5 429 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 LRTOMTQ8WZ04 291 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 TRMT61AQ96FX7 289 aaKnown RBP13.12□□□□□ -0.31
LIG1-219ENST00000600055 POM121L2Q96KW2 1035 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 RACGAP1Q9H0H5 632 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 FZR1Q9UM11 496 aa13.12□□□□□ -0.31
LIG1-219ENST00000600055 TMEM129A0AVI4 362 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 TFP02787 698 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 ANXA8P13928 327 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 FASP25445 335 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 STOMP27105 288 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 PYCR1P32322 319 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 DAPP51397 102 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 ERVS71-1P61550 626 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 CRMP1Q14194 572 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 KCNMB1Q16558 191 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 ACSM5Q6NUN0 579 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 SYT9Q86SS6 491 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 LRP11Q86VZ4 500 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 SVOPLQ8N434 492 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 ATG16L2Q8NAA4 619 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 OR9Q1Q8NGQ5 310 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 OR1J2Q8NGS2 313 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 OR5K1Q8NHB7 308 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 TEX47Q8TBZ9 253 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 PYDC1Q8WXC3 89 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 NRBF2Q96F24 287 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 Q96MF0 132 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 C1orf198Q9H425 327 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 ZNF556Q9HAH1 456 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 ASH2LQ9UBL3 628 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 BAIAP2Q9UQB8 552 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 SPEF1Q9Y4P9 236 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 FKBP7Q9Y680 259 aa13.11□□□□□ -0.31
LIG1-219ENST00000600055 C5orf49A4QMS7 147 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 B9A039 149 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 SNAP29O95721 258 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 OSMP13725 252 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 GLRXP35754 106 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 WNT5AP41221 380 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 GDI2P50395 445 aaKnown RBP13.1□□□□□ -0.31
LIG1-219ENST00000600055 ARHGDIAP52565 204 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 ACTR3P61158 418 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 LSM6P62312 80 aaKnown RBP13.1□□□□□ -0.31
LIG1-219ENST00000600055 GINS1Q14691 196 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 EFNB3Q15768 340 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 LYPD4Q6UWN0 246 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 PRSS57Q6UWY2 283 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 SLC26A10Q8NG04 563 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 OR51L1Q8NGJ5 315 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 TMUB1Q9BVT8 246 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 MRPL37Q9BZE1 423 aaKnown RBP13.1□□□□□ -0.31
LIG1-219ENST00000600055 SEMA6AQ9H2E6 1030 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 PLK3Q9H4B4 646 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 KLHL21Q9UJP4 597 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 POLR1DQ9Y2S0 133 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 CMAHPQ9Y471 501 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 USF3Q68DE3 2245 aa13.1□□□□□ -0.31
LIG1-219ENST00000600055 TRIM64A6NGJ6 449 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 TRIM64BA6NI03 449 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 H7C417 338 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 RER1O15258 196 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 SGCEO43556 437 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 DOK2O60496 412 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 HLA-DQA2P01906 255 aa13.09□□□□□ -0.31
LIG1-219ENST00000600055 GYPBP06028 91 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms