RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 GFYI3L273 518 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 PHF1O43189 567 aaPredicted RBP18.68■□□□□ 0.58
UPF1-207ENST00000599848 RNF4P78317 190 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 ARIH2OSQ8N7S6 290 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 FBXO17Q96EF6 278 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 CIB3Q96Q77 187 aaPredicted RBP18.68■□□□□ 0.58
UPF1-207ENST00000599848 SLC25A21Q9BQT8 299 aaPredicted RBP18.68■□□□□ 0.58
UPF1-207ENST00000599848 PAPLNO95428 1278 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 HTR4Q13639 388 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 SAMD10Q9BYL1 202 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 BIN3Q9NQY0 253 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 LIN7CQ9NUP9 197 aaKnown RBP18.68■□□□□ 0.58
UPF1-207ENST00000599848 MYH11P35749 1972 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 SLC9A3R2Q15599 337 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 CTU2Q2VPK5 515 aaKnown RBP18.68■□□□□ 0.58
UPF1-207ENST00000599848 C8orf44Q96CB5 159 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 R3HDMLQ9H3Y0 253 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 MEIKINA0A087WXM9 373 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 IGLV3-27P01718 113 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 SDHAP31040 664 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 CEACAM3P40198 252 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 GNB1P62873 340 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 VMA21Q3ZAQ7 101 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 AGBL4Q5VU57 503 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 LRRC61Q9BV99 259 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 SCPEP1Q9HB40 452 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 ZNF391Q9UJN7 358 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 R4GN57 208 aa18.68■□□□□ 0.58
UPF1-207ENST00000599848 BHLHE40O14503 412 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 IGHV3-9P01782 118 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 UBE2G1P62253 170 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 DUSP5Q16690 384 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 SYT14P1Q58G82 188 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 OR51F2Q8NH61 342 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 WFDC5Q8TCV5 224 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 C3orf49Q96BT1 292 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 TAAR6Q96RI8 345 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 SLC38A1Q9H2H9 487 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 ZCCHC4Q9H5U6 513 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 NRASP01111 189 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 FAM199XQ6PEV8 388 aaPredicted RBP18.67■□□□□ 0.58
UPF1-207ENST00000599848 MDGA2Q7Z553 956 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 TMEM200AQ86VY9 491 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 BHLHE23Q8NDY6 225 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 OR5D18Q8NGL1 313 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 GHSRQ92847 366 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 SMIM14Q96QK8 99 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 SDF2Q99470 211 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 S1PR5Q9H228 398 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 BAZ2AQ9UIF9 1905 aaKnown RBP18.67■□□□□ 0.58
UPF1-207ENST00000599848 SOCS6O14544 535 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 DHHO43323 396 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 LY86O95711 162 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 Q6ZNB5 142 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 VRK3Q8IV63 474 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 OR4D9Q8NGE8 314 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 UTP4Q969X6 686 aaKnown RBP18.67■□□□□ 0.58
UPF1-207ENST00000599848 SLAMF6Q96DU3 332 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 SERPINF1P36955 418 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 COL9A2Q14055 689 aaPredicted RBP18.67■□□□□ 0.58
UPF1-207ENST00000599848 PRTGQ2VWP7 1150 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 ZFP82Q8N141 532 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 DEFB108BQ8NET1 73 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 ZFAND2BQ8WV99 257 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 GRAMD2BQ96HH9 432 aa18.67■□□□□ 0.58
UPF1-207ENST00000599848 MEIS3P1A6NDR6 274 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 SNRPGP62308 76 aaKnown RBP18.66■□□□□ 0.58
UPF1-207ENST00000599848 CMPK2Q5EBM0 449 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 IDO2Q6ZQW0 420 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 OR51A4Q8NGJ6 313 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 FAM3DQ96BQ1 224 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 C1QTNF6Q9BXI9 259 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 RNF32Q9H0A6 362 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 UBR2Q8IWV8 1755 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 EFSO43281 561 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 HOXD11P31277 338 aaPredicted RBP18.66■□□□□ 0.58
UPF1-207ENST00000599848 SAXO2Q658L1 398 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 TRAT1Q6PIZ9 186 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 M1APQ8TC57 530 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 WWTR1Q9GZV5 400 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 MKRN2Q9H000 416 aaKnown RBP18.66■□□□□ 0.58
UPF1-207ENST00000599848 SYT11Q9BT88 431 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 WDR37Q9Y2I8 494 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 GASTP01350 101 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 HLA-HP01893 362 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 GPX2P18283 190 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 PLA1AQ53H76 456 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 SYT6Q5T7P8 510 aaPredicted RBP18.66■□□□□ 0.58
UPF1-207ENST00000599848 HES3Q5TGS1 186 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 NUFIP2Q7Z417 695 aaKnown RBP18.66■□□□□ 0.58
UPF1-207ENST00000599848 C17orf78Q8N4C9 275 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 OR52A5Q9H2C5 316 aa18.66■□□□□ 0.58
UPF1-207ENST00000599848 RGPD8O14715 1765 aaPredicted RBP18.66■□□□□ 0.58
UPF1-207ENST00000599848 C21orf140B9A014 251 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 SORBS2O94875 1100 aaKnown RBP18.65■□□□□ 0.58
UPF1-207ENST00000599848 TMEM130Q8N3G9 435 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 TMEM230Q96A57 120 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 C20orf85Q9H1P6 137 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 N4BP2Q86UW6 1770 aaPredicted RBP18.65■□□□□ 0.58
UPF1-207ENST00000599848 ARPC3O15145 178 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms