RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SPATA13Q96N96 652 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 TEAD3Q99594 435 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 DOK1Q99704 481 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 P2RY13Q9BPV8 354 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 ECSITQ9BQ95 431 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 C11orf70Q9BRQ4 267 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 TMEM246Q9BRR3 403 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 MED18Q9BUE0 208 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 TSSK1BQ9BXA7 367 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 MRPL13Q9BYD1 178 aaKnown RBP1.44□□□□□ -2.18
NUP54-208ENST00000508604 PARD6GQ9BYG4 376 aaPredicted RBP1.44□□□□□ -2.18
NUP54-208ENST00000508604 SLC5A7Q9GZV3 580 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 MFFQ9GZY8 342 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 DNTTIP1Q9H147 329 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 RGCCQ9H4X1 137 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 SMYD3Q9H7B4 428 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 KAT8Q9H7Z6 458 aaKnown RBP1.44□□□□□ -2.18
NUP54-208ENST00000508604 MAGEF1Q9HAY2 307 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 HMG20AQ9NP66 347 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 ZNF302Q9NR11 478 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 CHRAC1Q9NRG0 131 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 TMEM161AQ9NX61 479 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 BABAM2Q9NXR7 383 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 BFARQ9NZS9 450 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 VAPAQ9P0L0 249 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 IL20RAQ9UHF4 553 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 GUCA1BQ9UMX6 200 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 KCNK6Q9Y257 313 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 KCNIP3Q9Y2W7 256 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 SNX24Q9Y343 169 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 STARD10Q9Y365 291 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 UGT2A1Q9Y4X1 527 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 AP4S1Q9Y587 144 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 ALG5Q9Y673 324 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 ZNF609O15014 1411 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 NPHP4O75161 1426 aaPredicted RBP1.44□□□□□ -2.18
NUP54-208ENST00000508604 PTPRUQ92729 1446 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 CROCC2H7BZ55 1655 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 PBRM1Q86U86 1689 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 PCF11O94913 1555 aaKnown RBP1.44□□□□□ -2.18
NUP54-208ENST00000508604 CFAP74Q9C0B2 1584 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 ZMYM6O95789 1325 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 ADGRA3Q8IWK6 1321 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 ADGRL2O95490 1459 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 NKTRP30414 1462 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 PLA2R1Q13018 1463 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CLTCL1P53675 1640 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CEMIPQ8WUJ3 1361 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SLIT3O75094 1523 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TRBV6-6A0A0A6YYG2 114 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SLC5A10A0PJK1 596 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MGAT4DA6NG13 374 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PP2D1A8MPX8 630 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SUPT3HB4E1H0 165 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TRDCB7Z8K6 153 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 G3V2T6 193 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 M0QZ92 97 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 LGALS8O00214 317 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SYT7O43581 403 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 RAD1O60671 282 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 HCN1O60741 890 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TBX19O60806 448 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 B4GALT2O60909 372 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SCN2BO60939 215 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SDC3O75056 442 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 FKBP6O75344 327 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SLC22A5O76082 557 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PSMG1O95456 288 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CPNE6O95741 557 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PCCBP05166 539 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CHRNGP07510 517 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 H2AFZP0C0S5 128 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ACSM4P0C7M7 580 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PSKH1P11801 424 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CCL2P13500 99 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ZNF18P17022 549 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SRMP19623 302 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TBPP20226 339 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 GLRA1P23415 457 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 IL12AP29459 219 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 LCN1P31025 176 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 HNRNPH3P31942 346 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 MAS1LP35410 378 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ARR3P36575 388 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 DDOSTP39656 456 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MAP3K8P41279 467 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 KCNJ3P48549 501 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 RBP2P50120 134 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TNFSF10P50591 281 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CCR4P51679 360 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PRKXP51817 358 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 AKR1D1P51857 326 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 HSPA2P54652 639 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 RGS8P57771 180 aaPredicted RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 UBE2G2P60604 165 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SNAP25P60880 206 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 RAP1BP61224 184 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 NUTF2P61970 127 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 RBX1P62877 108 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TNNC1P63316 161 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms