RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NTNG1Q9Y2I2 539 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 OR2A25A4D2G3 310 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 EFSO43281 561 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 CRYAAP02489 173 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 RAB6AP20340 208 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 MMP11P24347 488 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 BCDIN3DQ7Z5W3 292 aaKnown RBP12.01□□□□□ -0.49
PTPRF-215ENST00000496447 CLRN3Q8NCR9 226 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 C16orf52Q8NHV5 167 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 TEX37Q96LM6 180 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 SCPEP1Q9HB40 452 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 WSB2Q9NYS7 404 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-215ENST00000496447 NHSL1Q5SYE7 1610 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 ARR3P36575 388 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 RFC3P40938 356 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 DUSP2Q05923 314 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 SFXN4Q6P4A7 337 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 GLIPR1L1Q6UWM5 242 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 LYPD4Q6UWN0 246 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 CAMKMTQ7Z624 323 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 RBM45Q8IUH3 476 aaKnown RBP12.01□□□□□ -0.49
PTPRF-215ENST00000496447 OR52I1Q8NGK6 324 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 FRZBQ92765 325 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 PCED1AQ9H1Q7 454 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 HRH4Q9H3N8 390 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 TAS2R16Q9NYV7 291 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 CACNA1SQ13698 1873 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 NUDT19A8MXV4 375 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 FADS1O60427 444 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 MPLP40238 635 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 MTNR1BP49286 362 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 RBMS2Q15434 407 aaKnown RBP12.01□□□□□ -0.49
PTPRF-215ENST00000496447 SHEQ5VZ18 495 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 DOK3Q7L591 496 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 POMT2Q9UKY4 750 aa12.01□□□□□ -0.49
PTPRF-215ENST00000496447 PCYT1BQ9Y5K3 369 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-215ENST00000496447 CXCL13O43927 109 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 DEFA4P12838 97 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 NAGAP17050 411 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 ZNF133P52736 654 aaPredicted RBP12□□□□□ -0.49
PTPRF-215ENST00000496447 CLDN15P56746 228 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 AANATQ16613 207 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 GLYATL3Q5SZD4 288 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 SLC17A4Q9Y2C5 497 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 YBX2Q9Y2T7 364 aaKnown RBP12□□□□□ -0.49
PTPRF-215ENST00000496447 LILRA5A6NI73 299 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 HSBP1L1C9JCN9 74 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 C17orf112F2Z3M2 114 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 TBXA2RP21731 343 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 FAM53BQ14153 422 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 NLRP8Q86W28 1048 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 PLPP7Q8NBV4 271 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 ST8SIA1Q92185 356 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 C12orf10Q9HB07 376 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 GPR55Q9Y2T6 319 aaPredicted RBP12□□□□□ -0.49
PTPRF-215ENST00000496447 GABARAPH6UMI1 98 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 SORDQ00796 357 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 ADGRE4PQ86SQ3 457 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 PPP1R2P9O14990 202 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 SRPXP78539 464 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 PTRH1Q86Y79 214 aaKnown RBP12□□□□□ -0.49
PTPRF-215ENST00000496447 OR6M1Q8NGM8 313 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 OR11A1Q9GZK7 315 aa12□□□□□ -0.49
PTPRF-215ENST00000496447 MED6O75586 246 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 CNIH1O95406 144 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 CLDN1O95832 211 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 TCRBP04435 133 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 SMUG1Q53HV7 270 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 GFRALQ6UXV0 394 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 FUNDC1Q8IVP5 155 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 RNF141Q8WVD5 230 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 GPR173Q9NS66 373 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 RAB22AQ9UL26 194 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 IMPA2O14732 288 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 GUSBP08236 651 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 PSMB1P20618 241 aaKnown RBP11.99□□□□□ -0.49
PTPRF-215ENST00000496447 MAGEB1P43366 347 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 GZMKP49863 264 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 RAB11AP62491 216 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 PRSS42Q7Z5A4 293 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 TCTE3Q8IZS6 198 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 CADM4Q8NFZ8 388 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 CPNE4Q96A23 557 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-215ENST00000496447 FAM3DQ96BQ1 224 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 RBMXL1Q96E39 390 aaKnown RBP11.99□□□□□ -0.49
PTPRF-215ENST00000496447 LINC00615Q96LM1 132 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-215ENST00000496447 PAPPA2Q9BXP8 1791 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 HS3ST1O14792 307 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 PAPLNO95428 1278 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 FCRL6Q6DN72 434 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 WDR88Q6ZMY6 472 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 KIRREL1Q96J84 757 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 IER2Q9BTL4 223 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 HES7Q9BYE0 225 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 A0A096LPE4 126 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 A0A1W2PPZ6 126 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 HRO43593 1189 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 GDNFP39905 211 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 HTR4Q13639 388 aa11.99□□□□□ -0.49
PTPRF-215ENST00000496447 TCEAL2Q9H3H9 227 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms