RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 OR4C3Q8NH37 302 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 NTNG2Q96CW9 530 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 OTUB1Q96FW1 271 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 OR52B2Q96RD2 323 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SDF2Q99470 211 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ZNF559Q9BR84 538 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ZNF385DQ9H6B1 395 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SDR39U1Q9NRG7 319 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 P2RX2Q9UBL9 471 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ZNF175Q9Y473 711 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 LRRC42Q9Y546 428 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 NCOA6Q14686 2063 aaPredicted RBP5.55□□□□□ -1.52
USP40-202ENST00000409945 OR2M5A3KFT3 312 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 SERINC4A6NH21 518 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 EVPLLA8MZ36 301 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 C5orf58C9J3I9 102 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 RCBTB2O95199 551 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 IGKV1D-16P01601 117 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 OR12D1P0DN82 309 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 CEACAM8P31997 349 aaPredicted RBP5.55□□□□□ -1.52
USP40-202ENST00000409945 CRATP43155 626 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 LHX2P50458 406 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 CRISP3P54108 245 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 CTBP2P56545 445 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 SQLEQ14534 574 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 TWIST1Q15672 202 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 SAXO2Q658L1 398 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 RTL6Q6ICC9 239 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 C9orf47Q6ZRZ4 202 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 NCCRP1Q6ZVX7 275 aaPredicted RBP5.55□□□□□ -1.52
USP40-202ENST00000409945 PEX5LQ8IYB4 626 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 DEFB107AQ8IZN7 70 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 GTPBP8Q8N3Z3 284 aaPredicted RBP5.55□□□□□ -1.52
USP40-202ENST00000409945 MARVELD2Q8N4S9 558 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 ZNF563Q8TA94 476 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 ROPN1LQ96C74 230 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 TRNT1Q96Q11 434 aaKnown RBP5.55□□□□□ -1.52
USP40-202ENST00000409945 TUBA1CQ9BQE3 449 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 SLC39A3Q9BRY0 314 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 EFCAB1Q9HAE3 211 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 BATF3Q9NR55 127 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 GLRX2Q9NS18 164 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 MED17Q9NVC6 651 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 KCNN3Q9UGI6 736 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 FREM3P0C091 2139 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 UNC79Q9P2D8 2635 aa5.55□□□□□ -1.52
USP40-202ENST00000409945 LOC100653049A0A140TA62 436 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 NKX2-6A6NCS4 301 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 A8MXE2 369 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 CASKO14936 926 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ANGPT2O15123 496 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 KRT34O76011 436 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 KRT36O76013 467 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 DBIP07108 87 aaKnown RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 ZCCHC18P0CG32 403 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ACADSP16219 412 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 STARP49675 285 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 NUDT2P50583 147 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ATP4BP51164 291 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 CLDN15P56746 228 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 CLDN18P56856 261 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 NANOS2P60321 138 aaKnown RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 COPZ1P61923 177 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 IL1RL1Q01638 556 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 RELQ04864 619 aaPredicted RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 FADDQ13158 208 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 SELENBP1Q13228 472 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ZNF141Q15928 474 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 KLHL26Q53HC5 615 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 PDZK1Q5T2W1 519 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 HBMQ6B0K9 141 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 LRRC74BQ6ZQY2 392 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 RNF130Q86XS8 419 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ZNF440Q8IYI8 595 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 PGAM4Q8N0Y7 254 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 RPRMLQ8N4K4 120 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 CNEP1R1Q8N9A8 125 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 OR52I2Q8NH67 350 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 OR5W2Q8NH69 310 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 SCARB1Q8WTV0 552 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 FAM216AQ8WUB2 273 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ST8SIA1Q92185 356 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 RNASE6Q93091 150 aaKnown RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 CPNE4Q96A23 557 aaPredicted RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 ZHX1-C8orf76Q96EF9 292 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 C14orf79Q96F83 325 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ZNF479Q96JC4 524 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 RNF145Q96MT1 663 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 DACH2Q96NX9 599 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 SF3B5Q9BWJ5 86 aaKnown RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 PINK1Q9BXM7 581 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 KRTAP4-5Q9BYR2 181 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 UCK2Q9BZX2 261 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ZNF350Q9GZX5 532 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 LAT2Q9GZY6 243 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 VCX3BQ9H321 246 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 MTHFD2LQ9H903 347 aaPredicted RBP5.54□□□□□ -1.52
USP40-202ENST00000409945 FLRT3Q9NZU0 649 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 CCDC167Q9P0B6 97 aa5.54□□□□□ -1.52
USP40-202ENST00000409945 ZNF337Q9Y3M9 751 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms