RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 WDFY2Q96P53 400 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 DCBLD2Q96PD2 775 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 MFRPQ9BY79 579 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 MIXL1Q9H2W2 232 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 NOX4Q9NPH5 578 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 FAM186AA6NE01 2351 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 TMEM212A6NML5 194 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 GLSO94925 669 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-202ENST00000339872 RAB3BP20337 219 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 KIR3DL2P43630 455 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 PPIAP62937 165 aaKnown RBP11.88□□□□□ -0.51
HMGB1-202ENST00000339872 IFITM3Q01628 133 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 SRYQ05066 204 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 MFGE8Q08431 387 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-202ENST00000339872 PDSS1Q5T2R2 415 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 UNQ9370/PRO34162Q6UXP9 181 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 TMEM123Q8N131 208 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 ZIC4Q8N9L1 334 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 CPNE4Q96A23 557 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-202ENST00000339872 ORAI1Q96D31 301 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 TIGARQ9NQ88 270 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 CENPMQ9NSP4 180 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 CYB5R1Q9UHQ9 305 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 FBXL3Q9UKT7 428 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 TRAV1-2A0A0B4J238 106 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 H3BSH0 61 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 TBX1O43435 398 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 PNPP00491 289 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 OCM2P0CE71 109 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 LHX2P50458 406 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 PHYHD1Q5SRE7 291 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 ABLIM2Q6H8Q1 611 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 SFXN4Q6P4A7 337 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 FDX2Q6P4F2 183 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 SYT9Q86SS6 491 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 TMEM178AQ8NBL3 297 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 TMEM54Q969K7 222 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 PNPLA2Q96AD5 504 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 DERL3Q96Q80 235 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 ABCB10Q9NRK6 738 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 CSAG2Q9Y5P2 127 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 FLVCR1Q9Y5Y0 555 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 PHF3Q92576 2039 aaKnown RBP11.87□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF716A6NP11 495 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF891A8MT65 544 aaPredicted RBP11.87□□□□□ -0.51
HMGB1-202ENST00000339872 LOC110117498-PIK3R3F6TDL0 507 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF432O94892 652 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 H2BFMP0C1H6 154 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 SOX2P48431 317 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 PPP3R1P63098 170 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 RGS21Q2M5E4 152 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 DEFB109BQ30KR1 87 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 Q499Y3 187 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF544Q6NX49 715 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 MZT2AQ6P582 158 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 RDH10Q8IZV5 341 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 ZFP62Q8NB50 900 aaPredicted RBP11.87□□□□□ -0.51
HMGB1-202ENST00000339872 OR10AC1Q8NH08 325 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 RNF133Q8WVZ7 376 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 PHYHIPQ92561 330 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 SLAMF6Q96DU3 332 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 SCMH1Q96GD3 660 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 SLC25A18Q9H1K4 315 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 C1orf198Q9H425 327 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 DAPK2Q9UIK4 370 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 SLC22A13Q9Y226 551 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 LHFPL6Q9Y693 200 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 V9GYH0 126 aa11.87□□□□□ -0.51
HMGB1-202ENST00000339872 CEP250Q9BV73 2442 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 A0A0G2JK05 382 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 PIN1P1O15428 100 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 HPGDSO60760 199 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF254O75437 659 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 UPK1BO75841 260 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 ITGB2P05107 769 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 TNFSF10P50591 281 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 CCR9P51686 369 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 CLDN18P56856 261 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 HYAL4Q2M3T9 481 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 CFAP77Q6ZQR2 320 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 FCRLAQ7L513 359 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 SLC22A16Q86VW1 577 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-202ENST00000339872 OR51A4Q8NGJ6 313 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 OR2AJ1Q8NGZ0 328 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 DIRAS2Q96HU8 199 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 SH3GL3Q99963 347 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 B3GAT2Q9NPZ5 323 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 POLE4Q9NR33 117 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 GDF2Q9UK05 429 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-202ENST00000339872 EMC9Q9Y3B6 208 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 UGT2A1Q9Y4X1 527 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 ASPMQ8IZT6 3477 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 TRBV5-5A0A0J9YX44 114 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 ACOT7O00154 380 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF708P17019 499 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 SRMP19623 302 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 MAPK3P27361 379 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-202ENST00000339872 SLC25A35Q3KQZ1 300 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 C10orf128Q5T292 105 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms