RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 RASD2Q96D21 266 aa13.99□□□□□ -0.17
LSM4-206ENST00000600289 MS4A3Q96HJ5 214 aa13.99□□□□□ -0.17
LSM4-206ENST00000600289 CHID1Q9BWS9 393 aa13.99□□□□□ -0.17
LSM4-206ENST00000600289 KCNN2Q9H2S1 579 aa13.99□□□□□ -0.17
LSM4-206ENST00000600289 MMADHCQ9H3L0 296 aaPredicted RBP13.99□□□□□ -0.17
LSM4-206ENST00000600289 BARX1Q9HBU1 254 aaPredicted RBP13.99□□□□□ -0.17
LSM4-206ENST00000600289 VNN3Q9NY84 501 aa13.99□□□□□ -0.17
LSM4-206ENST00000600289 SLC7A8Q9UHI5 535 aa13.99□□□□□ -0.17
LSM4-206ENST00000600289 SAMHD1Q9Y3Z3 626 aaKnown RBP13.99□□□□□ -0.17
LSM4-206ENST00000600289 IER3IP1Q9Y5U9 82 aa13.99□□□□□ -0.17
LSM4-206ENST00000600289 CHD3Q12873 2000 aaKnown RBP13.98□□□□□ -0.17
LSM4-206ENST00000600289 H7C1C5 153 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 IDH3BO43837 385 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 SNAP29O95721 258 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 PATE4P0C8F1 98 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 NR4A1P22736 598 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 CDAP32320 146 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 CDKN1AP38936 164 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 LCN6P62502 163 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 RAB39AQ14964 217 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 MST1LQ2TV78 715 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 RASSF6Q6ZTQ3 369 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 SYT9Q86SS6 491 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 PAPD5Q8NDF8 572 aaKnown RBP13.98□□□□□ -0.17
LSM4-206ENST00000600289 OR9Q2Q8NGE9 314 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 CANT1Q8WVQ1 401 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 NSMAFQ92636 917 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 HTRA1Q92743 480 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 DGCR6LQ9BY27 220 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 IL20Q9NYY1 176 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 IL20RAQ9UHF4 553 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 SPEF1Q9Y4P9 236 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 CDH10Q9Y6N8 788 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 ANK2Q01484 3957 aa13.98□□□□□ -0.17
LSM4-206ENST00000600289 USF3Q68DE3 2245 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 VSTM5A8MXK1 200 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 B9A039 149 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 PPP1R3DO95685 299 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 CTLA4P16410 223 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 GSTM3P21266 225 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 MSR1P21757 451 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 SERPINF1P36955 418 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 SNTB2Q13425 540 aaKnown RBP13.97□□□□□ -0.17
LSM4-206ENST00000600289 DAG1Q14118 895 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 DNM1P46Q6ZS02 220 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 PTCHD4Q6ZW05 846 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 LRRC18Q8N456 261 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 SLC30A7Q8NEW0 376 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 OR1J2Q8NGS2 313 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 FBXO17Q96EF6 278 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 SAMD8Q96LT4 415 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 ERMAPQ96PL5 475 aaPredicted RBP13.97□□□□□ -0.17
LSM4-206ENST00000600289 CACNG6Q9BXT2 260 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 SYT4Q9H2B2 425 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 LRMDAQ9H2I8 198 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 PLK3Q9H4B4 646 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 YY1AP1Q9H869 796 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 RNF121Q9H920 327 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 POLE4Q9NR33 117 aa13.97□□□□□ -0.17
LSM4-206ENST00000600289 ANK3Q12955 4377 aaKnown RBP13.97□□□□□ -0.17
LSM4-206ENST00000600289 HIVEP2P31629 2446 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 IQCMA0A1B0GVH7 501 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 SOCS2O14508 198 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 CST1P01037 141 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 GASTP01350 101 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 IGHV4-39P01824 125 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 OR4A8P0C604 315 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 ZNF32P17041 273 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 LAP3P28838 519 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 THBS4P35443 961 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 GLRXP35754 106 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 CDKN2AP42771 156 aaKnown RBP13.96□□□□□ -0.17
LSM4-206ENST00000600289 GUCA1AP43080 201 aaPredicted RBP13.96□□□□□ -0.17
LSM4-206ENST00000600289 EVX1P49640 407 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 PCBD1P61457 104 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 RPS23P62266 143 aaKnown RBP13.96□□□□□ -0.17
LSM4-206ENST00000600289 PLP2Q04941 152 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 ENDOGQ14249 297 aaKnown RBP13.96□□□□□ -0.17
LSM4-206ENST00000600289 SGCAQ16586 387 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 DNM1P34Q6PK57 102 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 CD300LDQ6UXZ3 194 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 SPATA24Q86W54 205 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 PHC2Q8IXK0 858 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 AQP11Q8NBQ7 271 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 Q96MF0 132 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 IFT27Q9BW83 186 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 CCNB1IP1Q9NPC3 277 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 PMF1-BGLAPU3KQ54 211 aa13.96□□□□□ -0.17
LSM4-206ENST00000600289 A0A1W2PPL8 197 aa13.95□□□□□ -0.18
LSM4-206ENST00000600289 C12orf71A8MTZ7 269 aa13.95□□□□□ -0.18
LSM4-206ENST00000600289 BHLHE40O14503 412 aa13.95□□□□□ -0.18
LSM4-206ENST00000600289 ICMTO60725 284 aa13.95□□□□□ -0.18
LSM4-206ENST00000600289 KHDRBS3O75525 346 aaKnown RBP13.95□□□□□ -0.18
LSM4-206ENST00000600289 CRABP1P29762 137 aa13.95□□□□□ -0.18
LSM4-206ENST00000600289 PPOXP50336 477 aa13.95□□□□□ -0.18
LSM4-206ENST00000600289 LSM6P62312 80 aaKnown RBP13.95□□□□□ -0.18
LSM4-206ENST00000600289 SNRPD2P62316 118 aaKnown RBP13.95□□□□□ -0.18
LSM4-206ENST00000600289 GALK2Q01415 458 aa13.95□□□□□ -0.18
LSM4-206ENST00000600289 KCNMB1Q16558 191 aa13.95□□□□□ -0.18
LSM4-206ENST00000600289 TBC1D28Q2M2D7 210 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms