RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GDNFP39905 211 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 PTH2RP49190 550 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 P2RY4P51582 365 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 BIDP55957 195 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 BTG1P62324 171 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 SF3B4Q15427 424 aaKnown RBP eCLIP18.13■□□□□ 0.492e-7■■■■□ 24.8
CLN3-230ENST00000568076 LPAL2Q16609 132 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 PCK2Q16822 640 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 LINC00346Q8IVM7 164 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 FADS6Q8N9I5 356 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 ST7LQ8TDW4 575 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 HAVCR1Q96D42 359 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 MRI1Q9BV20 369 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 OR2B2Q9GZK3 357 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 HS3ST3B1Q9Y662 390 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 RALGAPA1Q6GYQ0 2036 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 CENPXA8MT69 81 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 FAM205BPQ63HN1 556 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 C3orf33Q6P1S2 294 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 DNM1P34Q6PK57 102 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 DCXRQ7Z4W1 244 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 MIB2Q96AX9 1013 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 ZNF700Q9H0M5 742 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 DPAGT1Q9H3H5 408 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 NUDT15Q9NV35 164 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 KLHL13Q9P2N7 655 aa18.13■□□□□ 0.49
CLN3-230ENST00000568076 WDFY4Q6ZS81 3184 aa18.12■□□□□ 0.49
CLN3-230ENST00000568076 TRAV6A0A075B6T7 132 aa18.12■□□□□ 0.49
CLN3-230ENST00000568076 A0A1W2PNR3 127 aa18.12■□□□□ 0.49
CLN3-230ENST00000568076 TMIGD3P0DMS9 266 aaPredicted RBP18.12■□□□□ 0.49
CLN3-230ENST00000568076 GIFP27352 417 aa18.12■□□□□ 0.49
CLN3-230ENST00000568076 RRAS2P62070 204 aaPredicted RBP18.12■□□□□ 0.49
CLN3-230ENST00000568076 NDUFAF7Q7L592 441 aa18.12■□□□□ 0.49
CLN3-230ENST00000568076 GLB1L2Q8IW92 636 aa18.12■□□□□ 0.49
CLN3-230ENST00000568076 RABL2AQ9UBK7 228 aaPredicted RBP18.12■□□□□ 0.49
CLN3-230ENST00000568076 RABL2BQ9UNT1 228 aa18.12■□□□□ 0.49
CLN3-230ENST00000568076 RPH3AQ9Y2J0 694 aaPredicted RBP18.12■□□□□ 0.49
CLN3-230ENST00000568076 TECTAO75443 2155 aa18.12■□□□□ 0.49
CLN3-230ENST00000568076 MT-ND4P03905 459 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 TCRBP04435 133 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 RAB40ALP0C0E4 278 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 ZNF823P16415 610 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 CDK2P24941 298 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 RGS19P49795 217 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 CCR6P51684 374 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 BCL2L15Q5TBC7 163 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 TCTE3Q8IZS6 198 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 OR52I2Q8NH67 350 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 RAB40AQ8WXH6 277 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 S100A16Q96FQ6 103 aaKnown RBP18.11■□□□□ 0.49
CLN3-230ENST00000568076 CMKLR1Q99788 373 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 PLEKHA1Q9HB21 404 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 MCUBQ9NWR8 336 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 STEAP1Q9UHE8 339 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 ETV7Q9Y603 341 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 A0A0A6YYJ9 748 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 ZNF814B7Z6K7 855 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 KHDRBS3O75525 346 aaKnown RBP18.11■□□□□ 0.49
CLN3-230ENST00000568076 PTHLHP12272 177 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 ART1P52961 327 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 DYRK1AQ13627 763 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 CORO6Q6QEF8 472 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 NOXA1Q86UR1 476 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 OR4K17Q8NGC6 315 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 ASB5Q8WWX0 329 aa18.11■□□□□ 0.49
CLN3-230ENST00000568076 MRPL13Q9BYD1 178 aaKnown RBP18.11■□□□□ 0.49
CLN3-230ENST00000568076 MRPL15Q9P015 296 aaKnown RBP18.11■□□□□ 0.49
CLN3-230ENST00000568076 ZDBF2Q9HCK1 2354 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 AQP8O94778 261 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 SDHBP21912 280 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 RCVRNP35243 200 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 OR2Y1Q8NGV0 311 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 OR5B2Q96R09 309 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 CACNG6Q9BXT2 260 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 EMC9Q9Y3B6 208 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 NUBP2Q9Y5Y2 271 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 R4GMQ9 66 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 C9J4A7 227 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 GABARAPH6UMI1 98 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 MASP2O00187 686 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 TP53I11O14683 189 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 DOK2O60496 412 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 SYPP08247 313 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 CFPP27918 469 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 SNTB2Q13425 540 aaKnown RBP18.1■□□□□ 0.49
CLN3-230ENST00000568076 EXT1Q16394 746 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 TMEM69Q5SWH9 247 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 TCEAL6Q6IPX3 200 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 ZNF227Q86WZ6 799 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 ADPRHL1Q8NDY3 354 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 AKAP1Q92667 903 aaKnown RBP eCLIP18.1■□□□□ 0.49
CLN3-230ENST00000568076 THRSPQ92748 146 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 TCEAL3Q969E4 200 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 FAM210AQ96ND0 272 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 C7orf50Q9BRJ6 194 aaKnown RBP18.1■□□□□ 0.49
CLN3-230ENST00000568076 G6PC2Q9NQR9 355 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 SLC39A1Q9NY26 324 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 KLHL9Q9P2J3 617 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 KLK11Q9UBX7 282 aa18.1■□□□□ 0.49
CLN3-230ENST00000568076 BOLA1Q9Y3E2 137 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms