RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TMEM53Q6P2H8 277 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 PTCHD4Q6ZW05 846 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 SLC16A14Q7RTX9 510 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 KRTAP1-3Q8IUG1 177 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 FBXL14Q8N1E6 418 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 MUC15Q8N387 334 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 AQP11Q8NBQ7 271 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 PAPD5Q8NDF8 572 aaKnown RBP13.04□□□□□ -0.32
CPSF1-208ENST00000532560 FGFBP3Q8TAT2 258 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 SAMD8Q96LT4 415 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 DGCR6LQ9BY27 220 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 CA10Q9NS85 328 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 CBLN4Q9NTU7 201 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 SMIM31A0A1B0GVY4 71 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 SOCS2O14508 198 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 GASTP01350 101 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 SERPINA5P05154 406 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 MMP7P09237 267 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-208ENST00000532560 PATE4P0C8F1 98 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 GSTM3P21266 225 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 APOBEC3AP31941 199 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-208ENST00000532560 FABP6P51161 128 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 AQP4P55087 323 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 NKX6-1P78426 367 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-208ENST00000532560 RAB39AQ14964 217 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 FAM27BQ5VT28 67 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 SHEQ5VZ18 495 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 LPCAT4Q643R3 524 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 C11orf71Q6IPW1 123 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 RASSF6Q6ZTQ3 369 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 ZNF584Q8IVC4 421 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 PACRGLQ8N7B6 248 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 OR10G2Q8NGC3 310 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 OR52L1Q8NGH7 329 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 PERPQ96FX8 193 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 MS4A3Q96HJ5 214 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 ERMAPQ96PL5 475 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-208ENST00000532560 SNX18Q96RF0 628 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 TSC22D3Q99576 134 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 IFT27Q9BW83 186 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 SYT4Q9H2B2 425 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 KCNN2Q9H2S1 579 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 AP4S1Q9Y587 144 aa13.03□□□□□ -0.32
CPSF1-208ENST00000532560 ARID1AO14497 2285 aa13.02□□□□□ -0.32
CPSF1-208ENST00000532560 A0A1W2PPL8 197 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 IDH3BO43837 385 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 CST2P09228 141 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 ZNF35P13682 527 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 CTLA4P16410 223 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 MSR1P21757 451 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 GUCA1AP43080 201 aaPredicted RBP13.02□□□□□ -0.33
CPSF1-208ENST00000532560 ADAM8P78325 824 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 HGFACQ04756 655 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 SGCAQ16586 387 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 Q5PR19 223 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 PRSS57Q6UWY2 283 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 TGIF2LYQ8IUE0 185 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 LRRC18Q8N456 261 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 GTPBP3Q969Y2 492 aaKnown RBP13.02□□□□□ -0.33
CPSF1-208ENST00000532560 SLCO4A1Q96BD0 722 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 C1orf198Q9H425 327 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 EGLN3Q9H6Z9 239 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 ZNF442Q9H7R0 627 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 RNF121Q9H920 327 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 CCNB1IP1Q9NPC3 277 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 POLE4Q9NR33 117 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 ARMC1Q9NVT9 282 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 IL20Q9NYY1 176 aa13.02□□□□□ -0.33
CPSF1-208ENST00000532560 USF3Q68DE3 2245 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 CELSR1Q9NYQ6 3014 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 BHLHE40O14503 412 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 GNGT2O14610 69 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 KHDRBS3O75525 346 aaKnown RBP13.01□□□□□ -0.33
CPSF1-208ENST00000532560 TNFAIP8O95379 198 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 PTHP01270 115 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 FCGR1AP12314 374 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 LAP3P28838 519 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 CDKN2AP42771 156 aaKnown RBP13.01□□□□□ -0.33
CPSF1-208ENST00000532560 ERFP50548 548 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 ATP5J2P56134 94 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 DAG1Q14118 895 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 ETFDHQ16134 617 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 UGT2A3Q6UWM9 527 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 CD300LDQ6UXZ3 194 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 JAZF1Q86VZ6 243 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 SLC30A7Q8NEW0 376 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 WFDC11Q8NEX6 87 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 GIPC3Q8TF64 312 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 ZFAND2BQ8WV99 257 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 FBXO17Q96EF6 278 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 TRMT61AQ96FX7 289 aaKnown RBP13.01□□□□□ -0.33
CPSF1-208ENST00000532560 PLA2G12AQ9BZM1 189 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 TBC1D23Q9NUY8 699 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 DNAJB9Q9UBS3 223 aa13.01□□□□□ -0.33
CPSF1-208ENST00000532560 F8P00451 2351 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 SLC16A7O60669 478 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 E2F6O75461 281 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 SNAP29O95721 258 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 HIST1H1CP16403 213 aaKnown RBP13□□□□□ -0.33
CPSF1-208ENST00000532560 ZNF32P17041 273 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms