RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SNTB2Q13425 540 aaKnown RBP2.93□□□□□ -1.94
CD44-235ENST00000532339 TRIP10Q15642 601 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 CD226Q15762 336 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 SNRNP35Q16560 246 aaKnown RBP2.93□□□□□ -1.94
CD44-235ENST00000532339 SLC36A3Q495N2 470 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 LINC01620Q4KN68 170 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ZNF311Q5JNZ3 666 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 NCR3LG1Q68D85 454 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ASPHD2Q6ICH7 369 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 KDELC1Q6UW63 502 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 WASH2PQ6VEQ5 465 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 RGS9BPQ6ZS82 235 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 COX15Q7KZN9 410 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 NLRP9Q7RTR0 991 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 NET1Q7Z628 596 aaPredicted RBP2.93□□□□□ -1.94
CD44-235ENST00000532339 CRLF3Q8IUI8 442 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 C11orf53Q8IXP5 236 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 SNX31Q8N9S9 440 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 OR5AU1Q8NGC0 362 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 C10orf105Q8TEF2 133 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 GIPC3Q8TF64 312 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 COX14Q96I36 57 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 IMMP1LQ96LU5 166 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 WFIKKN1Q96NZ8 548 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 GSDMAQ96QA5 445 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 MED18Q9BUE0 208 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 SUCNR1Q9BXA5 334 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 OCR1Q9BZK8 76 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ZDHHC11Q9H8X9 412 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 CYP3A43Q9HB55 503 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ADGRL4Q9HBW9 690 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 PALMDQ9NP74 551 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ESM1Q9NQ30 184 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 FAM114A2Q9NRY5 505 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 KLHL28Q9NXS3 571 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 TAS2R16Q9NYV7 291 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 CTSFQ9UBX1 484 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 C3orf18Q9UK00 162 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 SPATA2Q9UM82 520 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 FBXO7Q9Y3I1 522 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 U3KQK5 164 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ZNF407Q9C0G0 2248 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 HEATR5AQ86XA9 2040 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 HUWE1Q7Z6Z7 4374 aaKnown RBP2.92□□□□□ -1.94
CD44-235ENST00000532339 NPIPA5A0A0B4J1W7 369 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 A0A0J9YVX5 310 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 PSMD11O00231 422 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 EI24O14681 340 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 MFN2O95140 757 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 MBD3O95983 291 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 FCGR3AP08637 254 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 CSF3P09919 207 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 PAX7P23759 505 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 LONP1P36776 959 aaKnown RBP2.92□□□□□ -1.94
CD44-235ENST00000532339 POU3F4P49335 361 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 CYB561P49447 251 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 GSK3BP49841 420 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 RHOAP61586 193 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 ZNHIT3Q15649 155 aaPredicted RBP2.92□□□□□ -1.94
CD44-235ENST00000532339 IL17AQ16552 155 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 C15orf32Q32M92 178 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 BEX5Q5H9J7 111 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 LINC00242Q5T6M2 205 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 SEL1L2Q5TEA6 688 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 SYPL2Q5VXT5 272 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 HACD2Q6Y1H2 254 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 LUZP2Q86TE4 346 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 ABHD12Q8N2K0 398 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 CENPSQ8N2Z9 138 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 SVOPLQ8N434 492 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 SAMD12Q8N8I0 201 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 FLVCR1-AS1Q8TAF5 88 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 OSTF1Q92882 214 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 TOMM40LQ969M1 308 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 ECHDC3Q96DC8 303 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 RAB3CQ96E17 227 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 B9D2Q9BPU9 175 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 TBCDQ9BTW9 1192 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 KRTAP4-3Q9BYR4 195 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 CDC42EP4Q9H3Q1 356 aaKnown RBP2.92□□□□□ -1.94
CD44-235ENST00000532339 TSPY26PQ9H489 355 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 RMND5AQ9H871 391 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 TRIM45Q9H8W5 580 aaPredicted RBP2.92□□□□□ -1.94
CD44-235ENST00000532339 COG4Q9H9E3 785 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 LPAR2Q9HBW0 351 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 FARSBQ9NSD9 589 aaKnown RBP2.92□□□□□ -1.94
CD44-235ENST00000532339 C1orf123Q9NWV4 160 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 GHRLQ9UBU3 117 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 CIDEBQ9UHD4 219 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 HPCAL4Q9UM19 191 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 CHMP2BQ9UQN3 213 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 SLC9A8Q9Y2E8 581 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 OBSCNQ5VST9 7968 aa2.92□□□□□ -1.94
CD44-235ENST00000532339 DNAH11Q96DT5 4516 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 PRR14LQ5THK1 2151 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 IGHV3-16A0A0C4DH30 117 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 A0A1B0GUS0 222 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 C5orf63A6NC05 138 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 OR6C74A6NCV1 312 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 GOLGA6L4A6NEF3 574 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms