RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	ASF1B	Q9NVP2	202 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	ARPC1B	O15143	372 aa	Known RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	HLA-A	P01891	365 aa	Known RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	TF	P02787	698 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	SOX8	P57073	446 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	GABARAPL2	P60520	117 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	TSSK2	Q96PF2	358 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	NRTN	Q99748	197 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	OPA3	Q9H6K4	179 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	UBQLN2	Q9UHD9	624 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	MAB21L2	Q9Y586	359 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	RAB6A	P20340	208 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	FAM71E1	Q6IPT2	247 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	PIWIL3	Q7Z3Z3	882 aa	Known RBP	13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	SYT9	Q86SS6	491 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	SEMA6D	Q8NFY4	1073 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	ZNF707	Q96C28	371 aa	Predicted RBP	13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	TNFRSF10A	O00220	468 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	TNFSF14	O43557	240 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	CD14	P08571	375 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	HIST1H1C	P16403	213 aa	Known RBP	13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	SPINK2	P20155	84 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	PRKACB	P22694	351 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	PDLIM3	Q53GG5	364 aa	Predicted RBP	13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	HSPE1-MOB4	S4R3N1	261 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	LYZL6	O75951	148 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	IGFBP1	P08833	259 aa	Predicted RBP	13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	ELP2	Q6IA86	826 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	PWWP2B	Q6NUJ5	590 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	RPL27	P61353	136 aa	Known RBP	13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	CT55	Q8WUE5	264 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	OR5B12	Q96R08	314 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	OR14A2	Q96R54	314 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144		A0A1W2PPV4	95 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	DLL1	O00548	723 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	IFNA1	P01562	189 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	CA5A	P35218	305 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	ZNF92	Q03936	586 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	SPINT2	O43291	252 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	CLDN1	O95832	211 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	ZNF385B	Q569K4	471 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	KRBOX4	Q5JUW0	171 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	ANGPTL5	Q86XS5	388 aa		13.13	□□□□□ -0.31
TRIO-222	ENST00000515144	ING1	Q9UK53	422 aa	Predicted RBP	13.13	□□□□□ -0.31
TRIO-222	ENST00000515144		H3BMQ9	156 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	IGLV3-25	P01717	112 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	GLI4	P10075	376 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	SHC1	P29353	583 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	TCTN1	Q2MV58	587 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	TMEM217	Q8N7C4	229 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	FAM221A	A4D161	298 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	MT-CO2	P00403	227 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	IFNA10	P01566	189 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	BMP2	P12643	396 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	IL3RA	P26951	378 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	TMEM179B	Q7Z7N9	219 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	ZNF420	Q8TAQ5	688 aa	Predicted RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	CACNG2	Q9Y698	323 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	SEMG1	P04279	462 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	CCL4	P13236	92 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	SNCA	P37840	140 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	RPS25	P62851	125 aa	Known RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	GRB2	P62993	217 aa	Known RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	FRZB	Q92765	325 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	DIDO1	Q9BTC0	2240 aa	Known RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	MAGEB4	O15481	346 aa	Predicted RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	HYAL3	O43820	417 aa	Predicted RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	OR2T7	P0C7T2	308 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	BPIFB2	Q8N4F0	458 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	CISD2	Q8N5K1	135 aa	Known RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	OR2T27	Q8NH04	317 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	AKR7L	Q8NHP1	331 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	FNDC8	Q8TC99	324 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	ANKRD19P	Q9H560	264 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	KITLG	P21583	273 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	HOXD12	P35452	270 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	ZXDA	P98168	799 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	ALKBH1	Q13686	389 aa	Known RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	PHC2	Q8IXK0	858 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	OR4D9	Q8NGE8	314 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	GABARAP	H6UMI1	98 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	ARNTL	O00327	626 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	GABARAP	O95166	117 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	UBC	P0CG48	685 aa	Known RBP	13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	ARR3	P36575	388 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	OR51E1	Q8TCB6	317 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144	TMEM9	Q9P0T7	183 aa		13.12	□□□□□ -0.31
TRIO-222	ENST00000515144		F5H5P2	479 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	SULT1B1	O43704	296 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	ZDHHC11B	P0C7U3	371 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	HTR2C	P28335	458 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	HLCS	P50747	726 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	LUM	P51884	338 aa	Predicted RBP	13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	IL11RA	Q14626	422 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	PRRX2	Q99811	253 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	COL4A5	P29400	1685 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	CACNA1G	O43497	2377 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	P2RX6	O15547	441 aa		13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	PHF1	O43189	567 aa	Predicted RBP	13.11	□□□□□ -0.31
TRIO-222	ENST00000515144	C5orf46	Q6UWT4	87 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms